1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTCAGCGAATATACAGTTGTGCACTCTGGATGTGCTTTGAAAGTCAGCTCACTTGCTCCTTTGGACAAAATATGCCTTCTTAGTTGTGGAGTATCTGCAGgtaacattgttcttactatgatattgccatcaagccatacactgctaagtcctctattttcatctttgaagttggtttcaggggttataatatccttcat...
species | Vitis vinifera |
transcript | Vv16s0039g00320.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACTTGCTCCTTTGGACAAAATATGCCTTCTTAGTTGTGGAGTATCTGCAG GTCTAGGAGCAGCTTGGAAGGTTGCCAATATAACCGAAGGATCAACTGTAGEST: gi|71859074|gb|DT008129.1|DT008129
genomic: ACTTGCTCCTTTGGACAAAATATGCCTTCTTAGTTGTGGAGTATCTGCAGgtaacattgt ... atattgttagGTCTAGGAGCAGCTTGGAAGGTTGCCAATATAACCGAAGGATCAACTGTAG
EST: ACTTGCTCCTTTGGACAAAATATGCCTTCTTAGTTGTGGAGTATCTGCAG GTCTAGGAGCAGCTTGGAEST: gi|71856725|gb|DT005780.1|DT005780
genomic: ACTTGCTCCTTTGGACAAAATATGCCTTCTTAGTTGTGGAGTATCTGCAGgtaacattgt ... atattgttagGTCTAGGAGCAGCTTGGA
EST: ACTTGCTCCTTTGGACAAAATATGCCTTCTTAGTTGTGGAGTATCTGCAG GTCTAGGAGCAGCTTGGAAGGTTGCCAATATAACCGEST: gi|71857033|gb|DT006088.1|DT006088
genomic: ACTTGCTCCTTTGGACAAAATATGCCTTCTTAGTTGTGGAGTATCTGCAGgtaacattgt ... atattgttagGTCTAGGAGCAGCTTGGAAGGTTGCCAATATAACCG
EST: ACTTGCTCCTTTGGACAAAATATGCCTTCTTAGTTGTGGAGTATCTGCAG GTCTAGGAGCAGCTTGGAAGG
genomic: ACTTGCTCCTTTGGACAAAATATGCCTTCTTAGTTGTGGAGTATCTGCAGgtaacattgt ... atattgttagGTCTAGGAGCAGCTTGGAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCAGCGAATATACAGTTGTGCACTCTGGATGTGCTTTGAAAGTCAGCTCACTTGCTCCTTTGGACAAAATATGCCTTCTTAGTTGTGGAGTATCTGCAGgtaacattgttcttactatgatattgccatcaagccatacactgctaagtcctctattttcatctttgaagttggtttcaggggttataatatccttcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG