Sequence
atgc intronic sequence ATGC exonic sequenceAGGCAGAAAAAGAGTTCAGGGTTGAAGTTGAGGCTATAGGCCATGTTCGGCATAAAAATCTTGTGCGACTTTTGGGCTATTGCATAGAAGGAGTTCACAGgtaagatttgttcactttttattgatgtggtaatttatttcattcctattcatttggcatgttggatgttattattatttattgtcatgatgaagtactttttcgttgaaaaacaaagtacttttccaattcttttgcaatcttgtcgatctgatttgcctgggatgtggttatgtacttattattctttaatatag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os10g35450.1 (Oryza sativa), 5'ss of exon 3
AGGCAGAAAAAGAGTTCAGGGTTGAAGTTGAGGCTATAGGCCATGTTCGGCATAAAAATCTTGTGCGACTTTTGGGCTATTGCATAGAAGGAGTTCACAGgtaagatttgttcactttttattgatg-tggtaatttatttcattcctattcatttggcatgttggatgttattattatttattgtcatgatgaagtactttttcgttgaaaaacaaagtacttttccaattcttttgcaatcttgtcgatctgatttgcctgggatgtggttatgtacttattattctttaatatag
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AGGCAGAAAAGGAGTTCAGGGTTGAAGTTGAGGCTATTGGCCACGTCAGGCATAAGAATCTTGTCCGCCTTCTAGGATATTGTGTTGAGGGAATCCACAGgtaaagct-atttatcaatcacctttgctgatggatggctagcttttgtttctactggcacattatttact-------tgcatagggatgtaggattgctcttggtct------------------------------------------------------------------------------------------
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g41730.1 (Oryza sativa), 5'ss of exon 2
AGGCAGAAAAAGAGTTCAGGGTTGAAGTTGAGGCTATAGGCCATGTTCGGCATAAAAATCTTGTGCGACTTTTGGGCTATTGCATAGAAGGAGTTCACAGgtaagatttgttcactttttattgatgtggtaatttatttcattcctattcatttggcatgttggatgttattattatttattgtcatga-tgaagtactttttcgttgaaaaacaaagtacttttccaattcttttgcaatcttgtcgatctgatttgcctgggatgtggttatgtacttattattctttaatatag
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AGGCAGAAAAAGAGTTCAAGGTTGAAGTTGAGTCTATTGGTCATGTTAGGCACAAGAATCTGGTGCGACTTCTAGGTTACTGCATTGAGGGAAGCTACAGgtaa-atctgtgttttgttagttagcct--ttatattttcagttgatcgttcatggatctgcaggaaattgtatatttttcttgcagtgactgctacaatatg-----------------------------------------------------------------------------------------------
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G026301_T01 (Zea mays), 5'ss of exon 3
AGGCAGAAAAAGAGTTCAGGGTTGAAGTTGAGGCTATAGGCCATGTTCGGCATAAAAATCTTGTGCGACTTTTGGGCTATTGCATAGAAGGAGTTCACAGgtaagatttgttcactttttattgatgtggtaatttatttcattcctattcatttggcatgttggatgttattattatttattgtcatgatgaagtactttttcgttgaaaaacaaagtacttttccaattcttttgcaatcttgtcgatctgatttgcctgggatgtggttatgtacttattattctttaatatag
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AAGCAGAAAAGGAGTTCAGGGTTGAAGTTGAGGCAATTGGACATGTCAGGCATAAGAATCTTGTCCGCCTTCTTGGATATTGCGTGGAGGGAATACACAGgtgaagctaatttctgatcaattgcactgacagatggatagattttctcttagtt--cagcttccatatgtatgtacctgattgttgttgatacatacataa-----------------------------------------------------------------------------------------------
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G017386_T02 (Zea mays), 5'ss of exon 4
AGGCAGAAAAAGAGTTCAGGGTTGAAGTTGAGGCTATAGGCCATGTTCGGCATAAAAATCTTGTGCGACTTTTGGGCTATTGCATAGAAGGAGTTCACAGgtaagatttgttcactttttattgatgtggtaatttatttcattcctattcatttggcatgttggatgttattattatttattgtcatgatgaagtactttttcgttgaaaaacaaagtacttttccaattcttttgcaatcttgtcgatctgatttgcctgggatgtggttatgtacttattattctttaatatag
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AGGCAGAAAAAGAATTCAGAGTGGAAGTTGAGGCTATTGGCCATGTCCGACATAAGAATTTGGTTCGGCTGTTGGGATATTGTGTTGAGGGCGTAAACAGgtatgttctactgaaaggc-atgaata-gcttgttcaac-catttctttcagtgacgtgtgcaattaggtaagaattcctaaaagtatggtaacctgaatatt----------------------------------------------------------------------------------------------
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA14G03290.1 (Glycine max), 5'ss of exon 2
AGGCAGAAAAAGAGTTCAGGGTTGAAGTTGAGGCTATAGGCCATGTTCGGCATAAAAATCTTGTGCGACTTTTGGGCTATTGCATAGAAGGAGTTCACAGgtaagatttgttcactttttattgatgtggtaatttattt-cattcctattcatttggcatgttggatgttattattatt-----tattgtcatgatga-agtactttttcgttgaaaaacaaagtacttttccaattcttttgcaatcttgtcgatctgatttgcctgggatgtggttatgtacttattattctttaatatag
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AAGCTGAGAAAGAATTCAGGGTTGAAGTGGAGGCTATAGGCCATGTTAGACATAAGCATCTTGTACGCCTTCTTGGATATTGTGTAGAAGGAGTTCACAGgtaaaaaatattctttgttttcctacattagtatccactaacactttgtattatattgcacattcattctcaataatagtgccagctttgggtttatgatagtcatattctacttagtccgaaattggacataagcttttctctgtgttatgtctcttt-atctgtc-ataatgaatgtgcttcctgattgatattcag-----
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G12830.1 (Glycine max), 5'ss of exon 2
AGGCAGAAAAAGAGTTCAGGGTTGAAGTTGAGGCTATAGGCCATGTTCGGCATAAAAATCTTGTGCGACTTTTGGGCTATTGCATAGAAGGAGTTCACAGgtaagatttgttcactttttattgatgtggtaatttatttcattcctattcatttggcatgttggatgttattattatttattgtcatgatgaagtactttttcgttgaaaaacaaagtacttttccaattcttttgcaatcttgtcgatctgatttgcctgggatgtggttatgtacttattattctttaatatag
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-AGCTGAGAAAGAATTCAGGGTGGAAGTAGAGGCTATTGGCCATGTCAGACATAAAAATCTTGTGCGCTTACTTGGTTATTGCGTAGAAGGAGTTCACAGGtaagctttgtaaaaatatcacaaatgc---atattttcccttctatattcgat---cacattacaaactttattttgtggtggtcttagtcttac-tttttttgtcaaaaatttgaacagaacatcttttccttgttatatagttctttttctttcataataaatgcggttgccgtctgatttgcagg--------
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G42170.2 (Glycine max), 5'ss of exon 2
AGGCAGAAAAAGAGTTCAGGGTTGAAGTTGAGGCTATAGGCCATGTTCGGCATAAAAATCTTGTGCGACTTTTGGGCTATTGCATAGAAGGAGTTCACAGgtaagatttgttcactttttattgatgtggtaatttatttcattcctattcatttggcatgttggatgttatt----attatttattgtcat-gatgaagtactttttcgttgaaaaacaaagtacttttccaattcttttgcaatcttgtcgatctgatttgcctgggatgtggttatgtacttattattctttaatatag
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AAGCAGAGAAAGAATTCAGGGTGGAAGTAGAGGCTATTGGCCATGTTAGACATAAAAATCTTGTACGATTACTTGGTTATTGCGTAGAAGGGGTTCACAGgtaaacttggtg---ttcttaatg-catcaaaatatcaccaatgcatatttcccttctatactcaatcacattgcaaactttattttgtgatagatgtgttacttttctgtcaaaaatttgaacagaacatcttttccttgttatatagttctttttcctttattatagatttggttgccgtctgatttgcag---------
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G45540.1 (Glycine max), 5'ss of exon 4
AGGCAGAAAAAGAGTTCAGGGTTGAAGTTGAGGCTATAGGCCATGTTCGGCATAAAAATCTTGTGCGACTTTTGGGCTATTGCATAGAAGGAGTTCACAGgtaagatttgttcactttttattgatgtggtaatttatttcattcctattcatttggcatgttggatgttattattatttattgtcatgatgaagtactttttcgttgaaaaacaaagtacttttccaattcttttgcaatcttgtcgatctgatttgcctgggatgtggttatgtacttattattctttaatatag
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AAGCTGAGAAAGAATTCAGGGTTGAAGTGGAGGCTATCGGCCATGTTAGACATAAGCATCTTGTACGCCTTCTTGGATATTGTGTAGAAGGAGTTCATAGgtaaaaaaatttctctggtttct--tacagaaaagtatc-cactaacaattttgtattatatttcacaaattcattctcaataatagtgccagctttgggttt----------------------------------------------------------------------------------------------
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G42960.1 (Arabidopsis thaliana), 5'ss of exon 2
AGGCAGAAAAAGAGTTCAGGGTTGAAGTTGAGGCTATAGGCCATGTTCGGCATAAAAATCTTGTGCGACTTTTGGGCTATTGCATAGAAGGAGTTCACAGgtaagatttgttcactttttattgatgtg-gtaatttatttcattcctattcatttggcatgttggatgttattattatttattgtcatgatgaagtactttttcgttgaaaaacaaagtacttttccaattcttttgcaatcttgtcgatctgatttgcctgggatgtggttatgtacttattattctttaatatag
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AAGCTGAGAAGGAATTTCGGGTAGAAGTTGAGGCTATTGGTCATGTACGGCACAAGAATCTTGTTAGGCTTTTAGGATATTGCATAGAGGGAGTTCATCGgtgagtctcacttgtctttaatccatttgagcaattggattgtactgaatctaaatataatgatgaatgcag------------------------------------------------------------------------------------------------------------------------------
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G59110.1 (Arabidopsis thaliana), 5'ss of exon 3
AGGCAGAAAAAGAGTTCAGGGTTGAAGTTGAGGCTATAGGCCATGTTCGGCATAAAAATCTTGTGCGACTTTTGGGCTATTGCATAGAAGGAGTTCACAGgtaagatttgttcactttttattgatgtggtaatttatttcattcctattcatttggcatgttggatgttattattatttattgtcatgatgaagtactttttcgttgaaaaacaaagtacttttccaattcttttgcaatcttgtcgatctgatttgcctgggatgtggttatgtacttattattctttaatatag
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AGGCTGAGAAGGAATTCCGGGTTGAAGTTGAGGCTATTGGTCATGTACGGCACAAGAATCTTGTAAGGCTTCTAGGATATTGCATAGAGGGTGTTAATAGgtgagtctgacttgtctcttatcagtctg--aatgta--------ctactaatttagtctcatgagtaatctcctattgtactaccgaatagaa--acttgtcccatgta---tcaatttctgttttgatg-taatgcag---------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71875365|gb|DT024420.1|DT024420EST: CATAAAAATCTTGTGCGACTTTTGGGCTATTGCATAGAAGGAGTTCACAG GATGCTGGTGTATGAATATGTGAACAATGGCAACTTAGAACAGTGGCTTCA
genomic: CATAAAAATCTTGTGCGACTTTTGGGCTATTGCATAGAAGGAGTTCACAGgtaagatttg ... tttaatatagGATGCTGGTGTATGAATATGTGAACAATGGCAACTTAGAACAGTGGCTTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGCAGAAAAAGAGTTCAGGGTTGAAGTTGAGGCTATAGGCCATGTTCGGCATAAAAATCTTGTGCGACTTTTGGGCTATTGCATAGAAGGAGTTCACAGgtaagatttgttcactttttattgatgtggtaatttatttcattcctattcatttggcatgttggatgttattattatttattgtcatgatgaagtactttttcgttgaaaaacaaagtacttttccaattcttttgcaatcttgtcgatctgatttgcctgggatgtggttatgtacttattattctttaatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG