Sequence
atgc intronic sequence ATGC exonic sequenceCTTACTTACCTTGGATATGATTTTCTTGCAATAAAGACTCTGGTTAATCGTGGAGTATTTGTAGCTGTTGGTCGTCAAATTGGTGTCGGGAAGGAGTCTGgtaatttttcttatatattcattttaatttcctgtaaaaaaattttgtttgtgtgttttcacattagatactgattatggtatttcgtttcttcaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0094g01560.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g66520.1 (Oryza sativa), 5'ss of exon 4
CTTACTTACCTTGGATATGATTTTCTTGCAATAAAGACTCTGGTTAATCGTGGAGTATTTGTAGCTGTTGGTCGTCAAATTGGTGTCGGGAAGGAGTCTGgtaatttttcttatatattcattttaatttcctgtaaaaaaattttgtttgtgtgttttcacattagatactgattatggtatttcgtttcttcaag
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CTCACATATCTTGGGTATGATTTCCTCGCCATCAAAACCTTGGTTAATCGTGGAGTATTTGCTTCAGTTGGTCGGCAAATTGGTGTTGGAAAGGAGTCAGgtacatgctgttgatgatgttttctcatgttttacttttatgtcacaatcgcatatcagatgttctaacatttgtctaatctttcctttacctgcag
upper sequence: Vv05s0094g01560.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G472991_T01 (Zea mays), 5'ss of exon 6
CTTACTTACCTTGGATATGATTTTCTTGCAATAAAGACTCTGGTTAATCGTGGAGTATTTGTAGCTGTTGGTCGTCAAATTGGTGTCGGGAAGGAGTCTGgtaatttttcttatatattcattttaatttcctgtaaaaaaattttgtttgtgtgttttcacattagatactgattatggtatttcgtttcttcaag
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CTCACCTATCTAGGATATGACTTCCTTGCCATCAAGACTTTGGTTAATCGGGGAGTTTTTGCTTCAGTTGGCCGTCAGATCGGTGTTGGAAAGGAGTCTGgtatgttgtgtt-catattgtttgttctttgtttgtcatgtggctagcgcacatgaagttatttctaatatct-ctatgatatacag----------
upper sequence: Vv05s0094g01560.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G04910.1 (Glycine max), 5'ss of exon 4
CTTACTTACCTTGGATATGATTTTCTTGCAATAAAGACTCTGGTTAATCGTGGAGTATTTGTAGCTGTTGGTCGTCAAATTGGTGTCGGGAAGGAGTCTGgtaatttttcttatatattcat--tttaatttcctgtaaaaaaattttgtttgtgtgttttcacattagatactgattatggtatttcgtttcttcaag-
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-TTACCTACCTTGGTTATGATTTTCTTGCCATTAAGACTATGGTGAACAAAGGAGTGTTTGTAGCTGTTGGACGCCAGATTGGTGTTGGAAAGGAATCTGGtattttagttgatgttcttctgattgggtgccctttgttcaatcacatttcacacgtttt----tctgctatttatgttggtgtttgtgctctgctaga
upper sequence: Vv05s0094g01560.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G33320.1 (Glycine max), 5'ss of exon 4
CTTACTTACCTTGGATATGATTTTCTTGCAATAAAGACTCTGGTTAATCGTGGAGTATTTGTAGCTGTTGGTCGTCAAATTGGTGTCGGGAAGGAGTCTGgtaatttttcttatatattcat--tttaatttcctgtaaaaaaattttgtttgtgtgttttcacattagatactgattatggtatttcgtttcttcaag
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CTTACCTACCTTGGTTATGATTTTCTTGCCATTAAGACTATGGTGAACAAAGGAGTGTTTGTGGCTGTTGGACGTCAGATTGGCGTTGGAAAGGAATCTGgtattttagttaatgttcttctgatgtggtgccctttgttcaatcacatttcagacgttttct-----gctaattgtgttgctgtttgtgctctgctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110427485|gb|EC993924.1|EC993924EST: TGGAGTATTTGTAGCTGTTGGTCGTCAAATTGGTGTCGGGAAGGAGTCTG ATATATTTGAAGTTGCCAAGGAAGATGGCACAGTCTTGGCAATGAAGCTGC
genomic: TGGAGTATTTGTAGCTGTTGGTCGTCAAATTGGTGTCGGGAAGGAGTCTGgtaatttttc ... tttcttcaagATATATTTGAAGTTGCCAAGGAAGATGGCACAGTCTTGGCAATGAAGCTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTACTTACCTTGGATATGATTTTCTTGCAATAAAGACTCTGGTTAATCGTGGAGTATTTGTAGCTGTTGGTCGTCAAATTGGTGTCGGGAAGGAGTCTGgtaatttttcttatatattcattttaatttcctgtaaaaaaattttgtttgtgtgttttcacattagatactgattatggtatttcgtttcttcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG