Sequence
atgc intronic sequence ATGC exonic sequenceCAGCTGAAAATGTGCTTGGGGAAGGTGGATATGGAGTTGTCTATAAGGGCAGACTAATCAATGGAGCTGAGGTAGCAGTGAAGAAGCTTCTTAATAATCTgtaagaatagatcaaaagcaccttctctcactttttatgatgctttggttgaaatttggtttatgactgcattatgaaatgggttcacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G031400_T01 (Zea mays), 5'ss of exon 2
CAGCTGAAAATGTGCTTGGGGAAGGTGGATATGGAGTTGTCTATAAGGGCAGACTAATCAATGGAGCTGAGGTAGCAGTGAAGAAGCTTCTTAATAATCTgtaagaata-gatcaaaagcaccttctctcactttttatgatgctttggttgaaatttggtttatgact-gcattatgaaatgggttcacag
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CGAAGAGCAATGTTCTTGGGGAGGGTGGCTACGGAGTTGTCTACAAGGGCCGTCTGGTGAATGGGACTGAGATCGCCGTGAAGAAGATCCTTAATAATGTgtaagtgtacagtctcgctgagtttaccttgtaatgtattgacttagagctgagatttggtatctggtttgcag------------------
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G45540.1 (Glycine max), 5'ss of exon 3
CAGCTGAAAATGTGCTTGGGGAAGGTGGATATGGAGTTGTCTATAAGGGCAGACTAATCAATGGAGCTGAGGTAGCAGTGAAGAAGCTTCTTAATAATCTgtaagaatag------atcaaaagcaccttctctca-----ctttttatgatgcttt---ggttgaaatttggtttatgactgcattatgaaatgggttcacag------------------------
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CAAGCGAAAACATCATTGGTGAAGGTGGATATGGCATTGTTTACAGGGGCAGACTGATTAATGGGACTGAGGTGGCAGTGAAGAAGCTTCTTAACAACTTgtaaggatatttatttatcattgatataccctttaagggttttttttgtggcactttttggcatgacacataaacaacaacttcttt-taatcttgttatgtaattgagttctacattgaattccaag
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA14G03290.1 (Glycine max), 5'ss of exon 1
CAGCTGAAAATGTGCTTGGGGAAGGTGGATATGGAGTTGTCTATAAGGGCAGACTAATCAATGGAGCTGAGGTAGCAGTGAAGAAGCTTCTTAATAATCTgtaagaatag------atcaaaagcaccttctctcactttttatgatgctttggtt---gaaatt-----tggtttatgactgcattatgaaatgggtt-cacag------------------------
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CAAGCGAGAACATCATTGGCGAGGGTGGATATGGGATTGTTTACAGGGGCAGACTGGTTAATGGAACCGAGGTGGCAGTGAAGAAGCTTCTTAACAACTTgtaaggatatttatttatcaatggtgtaccctttaattttttttcttctgccagtttctgacactacacataaacaatgacttcttttttaatcttgttatgtaattgagttctgcattgaattcctag
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G59110.1 (Arabidopsis thaliana), 5'ss of exon 2
CAGCTGAAAATGTGCTTGGGGAAGGTGGATATGGAGTTGTCTATAAGGGCAGACTAATCAATGGAGCTGAGGTAGCAGTGAAGAAGCTTCTTAATAATCTgtaagaatagatcaaaagcaccttctctcactttttatgatgctttggttgaaatttggtttatgactgcattatgaaatgggttcacag----
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CTGCTGAAAATGTAATCGGTGAGGGTGGTTATGGAGTAGTTTATAAGGGTAGACTCATCAACGGTAATGATGTTGCTGTAAAGAAGCTTCTTAACAATCTgtaagtttttctttttttgggtttatcaaatgttggtttgtgctt-gcttcctttttacttgtttagtaaatcctaacacaattttgtctctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71875365|gb|DT024420.1|DT024420EST: AGACTAATCAATGGAGCTGAGGTAGCAGTGAAGAAGCTTCTTAATAATCT GGGACAGGCAGAAAAAGAGTTCAGGGTTGAAGTTGAGGCTATAGGCCATGT
genomic: AGACTAATCAATGGAGCTGAGGTAGCAGTGAAGAAGCTTCTTAATAATCTgtaagaatag ... gggttcacagGGGACAGGCAGAAAAAGAGTTCAGGGTTGAAGTTGAGGCTATAGGCCATGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGCTGAAAATGTGCTTGGGGAAGGTGGATATGGAGTTGTCTATAAGGGCAGACTAATCAATGGAGCTGAGGTAGCAGTGAAGAAGCTTCTTAATAATCTgtaagaatagatcaaaagcaccttctctcactttttatgatgctttggttgaaatttggtttatgactgcattatgaaatgggttcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC