Sequence
atgc intronic sequence ATGC exonic sequenceGCATGGAGGCACTTACAAGGTCTTGAAGAACTTGCTCAAGTATAAGCTTTTGCACCATGACTCTTCAAAATgtaaggaactattaatagaaactataaaacagtaaacctcatttttcgatccatttgattatatttatagcttattcacaaaaaaaaaaaggcttgatcatgtttgttctgtgcatctag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0094g01560.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G33320.1 (Glycine max), 5'ss of exon 3
GCATGGAGGCACTTACAAGGTCTTGAAGAACTTGCTCAAGTATAAGCTTTTGCACCATGACTCTTCAAAATgtaaggaactattaataga--aactataaaacagtaaacctcatttttcgatccatttgattatatttatagcttattcacaaaaaaaaaaaggcttgatcatgtttgttctgtgcatctag
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GCATGGAGGCACGTACAAGGTTTTGAAAAACTTGCTCAAGCATAAGTTGTTGCACCACGACTCCTCTAAATgttagtaccttctaatctatttattattattca-tagactatgtttggcaa---aactagccaaaaaacta-cttggaggttggaaagtggaagctgaaaaacta-----------------
upper sequence: Vv05s0094g01560.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G04910.1 (Glycine max), 5'ss of exon 3
GCATGGAGGCACTTACAAGGTCTTGAAGAACTTGCTCAAGTATAAGCTTTTGCACCATGACTCTTCAAAATgtaaggaactattaa--tagaaactataaaac--agtaaacctcatttttcgatccatttgattatatttatagcttattcacaaaaaaaaaaaggcttgatcatgtttgttctgtgcatctag
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-CATGGAGGCACGTACAAGGTTTTGAAAAACTTGCTCAAACACAAGTTGTTGCATCACGACTCTTCTAAATGttagtaccttctaatctgtttattattatatttagtaaaaaggaaaatctaatataaatatatagaagttcatttgaatgaccctctaatatgtgagagcttaatttgattttaga-------
upper sequence: Vv05s0094g01560.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G51270.2 (Arabidopsis thaliana), 5'ss of exon 4
GCATGGAGGCACTTACAAGGTCTTGAAGAACTTGCTCAAGTATAAGCTTTTGCACCATGACTCTTCAAAATgtaaggaactattaatagaaactataaaacagtaaacctcatttttcgatccatt--tgattatatttatagcttattcacaaaaaaaaaaaggcttgatcatgtttgttc-tgtgcatctag
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ACATGGAGGCACCTACAAGGTCCTGAAGAACTTGCTCAAGTATAAGCTTTTGCACCACGATTCCTCTAAATgtgaggaattatctctataggc-----attagtaacttttcttgatatgtcttttgaggattggaagtcttgttaagttgcagaatcttatcgctattgcgttctttgtttatatctgtctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110427485|gb|EC993924.1|EC993924EST: CTTGAAGAACTTGCTCAAGTATAAGCTTTTGCACCATGACTCTTCAAAAT ATGATGGGTTTCGGCTTACTTACCTTGGATATGATTTTCTTGCAATAAAGA
genomic: CTTGAAGAACTTGCTCAAGTATAAGCTTTTGCACCATGACTCTTCAAAATgtaaggaact ... gtgcatctagATGATGGGTTTCGGCTTACTTACCTTGGATATGATTTTCTTGCAATAAAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCATGGAGGCACTTACAAGGTCTTGAAGAACTTGCTCAAGTATAAGCTTTTGCACCATGACTCTTCAAAATgtaaggaactattaatagaaactataaaacagtaaacctcatttttcgatccatttgattatatttatagcttattcacaaaaaaaaaaaggcttgatcatgtttgttctgtgcatctag
- - - - - - - - - - - TTGAAG
- - - - - - - - - - - TGAAGA
- - - - - - - - - - - - AAGAAC