1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GATAGAAGAAGTGGAAGTCAGCCCGCCACAGCCTATGGAGATTAGGATTAAAGTTGTCTCCACTTCTCTCTGCCGCAGTGATATCACCGCTTGGTCTCAGgtcaactcatctccacattttcaccttcttcatttctaatccctatttatttgcttcatattccttagttgttaatggctattagacttgccattaattt...
species | Vitis vinifera |
transcript | Vv16s0039g00320.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAGTTGTCTCCACTTCTCTCTGCCGCAGTGATATCACCGCTTGGTCTCAG GCTCCTATATTTCCTCGGATTTTTGGTCATGAGGCCTCTGGEST: gi|71856725|gb|DT005780.1|DT005780
genomic: AAGTTGTCTCCACTTCTCTCTGCCGCAGTGATATCACCGCTTGGTCTCAGgtcaactcat ... gtttgtgcagGCTCCTATATTTCCTCGGATTTTTGGTCATGAGGCCTCTGG
EST: AAGTTGTCTCCACTTCTCTCTGCCGCAGTGATATCACCGCTTGGTCTCAG GCTCCTATATTTCCTCGGATTTTTGGTCATGAGGCCTCTGGEST: gi|161706508|gb|FC055029.1|FC055029
genomic: AAGTTGTCTCCACTTCTCTCTGCCGCAGTGATATCACCGCTTGGTCTCAGgtcaactcat ... gtttgtgcagGCTCCTATATTTCCTCGGATTTTTGGTCATGAGGCCTCTGG
EST: AAGTTGTCTCCACTTCTCTCTGCCGCAGTGATATCACCGCTTGGTCTCAG GCTCCTATATTTCCTCGGATTTTAGGTCATGAGGCCTCTGGEST: gi|71857033|gb|DT006088.1|DT006088
genomic: AAGTTGTCTCCACTTCTCTCTGCCGCAGTGATATCACCGCTTGGTCTCAGgtcaactcat ... gtttgtgcagGCTCCTATATTTCCTCGGATTTTTGGTCATGAGGCCTCTGG
EST: AAGTTGTCTCCACTTCTCTCTGCCGCAGTGATATCACCGCTTGGTCTCAG GCTCCTATATTTCCTCGGATTTTTGGTCATGAGGCCTCTGG
genomic: AAGTTGTCTCCACTTCTCTCTGCCGCAGTGATATCACCGCTTGGTCTCAGgtcaactcat ... gtttgtgcagGCTCCTATATTTCCTCGGATTTTTGGTCATGAGGCCTCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATAGAAGAAGTGGAAGTCAGCCCGCCACAGCCTATGGAGATTAGGATTAAAGTTGTCTCCACTTCTCTCTGCCGCAGTGATATCACCGCTTGGTCTCAGgtcaactcatctccacattttcaccttcttcatttctaatccctatttatttgcttcatattccttagttgttaatggctattagacttgccattaattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttcttc