Sequence
atgc intronic sequence ATGC exonic sequenceTGTTCTAGTTCACAGTGGCGGAGTGCATGGTGGACATTATTATGCCTTTATAAGACCCACCCTTTCTGATCAGTGgtatggactgtattcccagattttgcacattctatcatttatatgtgtatgtataagtgtattagcaattgcttccaagcatctatggtgtgcctcaatg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA20G11330.1 (Glycine max), 5'ss of exon 3
TGTTCTAGTTCACAGTGGCGGAGTGCATGGTGGACATTATTATGCCTTTATAAGACCCACCCTTTCTGATCAGTGgtatg---gactgtattcccagattttgcacattctatcatttatatgtgtatgtataagtgtattagcaattgct---tccaagcatctatggtgtgcctcaatg
|||| | ||||||||||| || ||||||||||||||||||||||| ||||| || || ||||| ||||| |||||||||| | || || |||| | || || | | | || | || | || || || | ||| ||| | || |
TGTTTTGGTTCACAGTGGAGGTGTGCATGGTGGACATTATTATGCTTTTATCAGGCCAACCCTCTCTGAACAGTGgtatgtgtaatagtgttgggagatctctgctgctc-attgcctgttgatcta---gcatgtatttttacatttatgtgatgcaaacatgagacataaatatcta--
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA14G04890.1 (Glycine max), 5'ss of exon 11
TGTTCTAGTTCACAGTGGCGGAGTGCATGGTGGACATTATTATGCCTTTATAAGACCCACCCTTTCTGATCAGTGgtatgg--actgtattcccag------attttgca-cattctatcatttatatgtgtatgtataagtgtattagcaattgcttccaagcatctatggtgtgcctcaatg
||| | ||||||||||| || ||||||||||||||||||||||| ||||| || || || || ||||| |||||||||| ||| | | || ||||| || ||| | || |||| | ||| | |||| | | | || | || |||
CGTTTTGGTTCACAGTGGTGGTGTGCATGGTGGACATTATTATGCTTTTATCAGGCCGACTCTATCTGAGCAGTGgtatgtttactctgcttttaggtctgaatttttcagtgccatatgagctacatgtttttgtgcatgtgtgatgatgactacta--ggggcctcattacatgc-------
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA02G43930.1 (Glycine max), 5'ss of exon 11
TGTTCTAGTTCACAGTGGCGGAGTGCATGGTGGACATTATTATGCCTTTATAAGACCCACCCTTTCTGATCAGTGgtatgga--ctgtattcccagattttgcacattctatcatttatatgtgtatgtataagtgtattagcaattgcttcca-agcatctatggtgtgcctcaatg-
||| | ||||||||||| || ||||||||||||||||||||||| ||||| || || || || ||||| |||||||||| | || | || | || | ||||| | || | | | || ||| || | | ||| || | || | | |
CGTTTTGGTTCACAGTGGTGGTGTGCATGGTGGACATTATTATGCTTTTATCAGGCCAACTCTATCTGAGCAGTGgtatgtatactagagctttcaggcctgaatttttcagtgcc-atatgagc---tacatgcttttttgcatgtgtgatgatgactactagggggcgcattactat
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: PP1S123_138V6.1 (Physcomitrella patens), 5'ss of exon 11
TGTTCTAGTTCACAGTGGCGGAGTGCATGGTGGACATTATTATGCCTTTATAAGACCCACCCTTTCTGATCAGTGgtatgga--ctgtatt--cccagattttgcacattctatcatttatatgtgtatgtataagtgtattagcaattgcttccaagcatctatggtgtgcctcaatg
||| || ||||||||||| ||||| |||||||| ||||| || || ||||| |||||||| || ||||| ||||||||| ||| || | | | || | | | || || | | || || ||| | | | | | | | || | ||
TGTACTGGTTCACAGTGGTGGAGTACATGGTGGTCATTACTACGCTTTTATCAGACCCACACTCTCTGACCAGTGgtattttttctgcatcaactcgtaattgtcggttgtctttgcttctacgagcgtggttacatgtgcatggactcgtattttaaaagtagaagtcggtttc----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110388155|gb|EC952874.1|EC952874EST: CATGGTGGACATTATTATGCCTTTATAAGACCCACCCTTTCTGATCAGTG GTATAAATTTGATGATGAAAGGGTGACAAAAGAAGACGTGAAGAGGGCTTT
genomic: CATGGTGGACATTATTATGCCTTTATAAGACCCACCCTTTCTGATCAGTGgtatggactg ... aatttttcagGTATAAATTTGATGATGAAAGGGTGACAAAAGAAGACGTGAAGAGGGCTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTTCTAGTTCACAGTGGCGGAGTGCATGGTGGACATTATTATGCCTTTATAAGACCCACCCTTTCTGATCAGTGgtatggactgtattcccagattttgcacattctatcatttatatgtgtatgtataagtgtattagcaattgcttccaagcatctatggtgtgcctcaatg
- - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - GGTGGA