Sequence
atgc intronic sequence ATGC exonic sequenceATAGCTCTGGAGCTGTTAATGAGGTCACAAATACGATAATGCAAAAGTTTTGGGATTCAACACTTGCTCTAGAGCCACCAGATGATTATGACACCCAGAGgtatctcttttgctaccataattatttgttatatgttggtaaactggtagttcaataactagtcctgttgatgttatgtacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g02750.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os11g06930.1 (Oryza sativa), 5'ss of exon 10
ATAGCTCTGGAGCTGTTAATGAGGTCACAAATACGATAATGCAAAAGTTTTGGGATTCAACACTTGCTCTAGAGCCACCAGATGAT---TATGACACCCAGAGgtatctcttttgctaccataattatttgttatatgttggt--aaactggtagttcaataactagtcctgttgatgttatgtacag
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---GTCCTGAGACCACGAATGGTGTGGCAAACACAATAATGCAAAAGTTTTGGGACTCAGCTCTTGCTTTGGAGCCCCCAGATGAGGAATTTGATAGTCGCAGgt-taattaacgcttccttttttgtcctttgtcctctttttcaaatttgcaattc-----ttacctgcatttttgcattgttcag
upper sequence: Vv07s0031g02750.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA08G00560.1 (Glycine max), 5'ss of exon 10
ATAGCTCTGGAGCTGTTAATGAGGTCACAAATACGATAATGCAAAAGTTTTGGGATTCAACACTTGCTCTAGAGCCACCAGATGATTATGACACCCAGAGgtatctcttttgctaccataattatttgttatatgttggtaaactggtagttcaataactagtcctgttgatgttatgt-acag
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GTAGCTCTGGAGCTGTTAATGATGTGGCAAATACAATTATGCAAAAATTTTGGGACTCAGCTTTTAATCTAGAACCACCGGAAGATTCTGATACTCATAGgtaatcttgttgtgtagacatttaaacacaagat-ttgttttgttc-tgatccttgaatcagcctatatgatgttctattgcag
upper sequence: Vv07s0031g02750.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA05G32930.1 (Glycine max), 5'ss of exon 10
ATAGCTCTGGAGCTGTTAATGAGGTCACAAATACGATAATGCAAAAGTTTTGGGATTCAACACTTGCTCTAGAGCCACCAGATGATTATGACACCCAGAGgtatctc--ttttgctaccat--aattatttgttatatgttggtaaactggtagttcaataacta-gtcctgttgatgttatgt-acag
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GTAGCTCTGGAGCTGTTAATGATGTGGCAAATACAATTATGCAAAAATTTTGGGACTCAGCTTTTAATCTAGAACCACCGGAAGATTCTGATACTCATAGgtaatctggttgtgcagacatttaaacacaagctttgttttgttctgatccttgatcggcctgtatgatgtattgatgttctattgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30128840|gb|CB914179.1|CB914179EST: TGGGATTCAACACTTGCTCTAGAGCCACCAGATGATTATGACACCCAGAG TGAATTGTCTGCGGTGATGGCAGCAGATGGGGCTGAACCTGGGAGGAACAT
genomic: TGGGATTCAACACTTGCTCTAGAGCCACCAGATGATTATGACACCCAGAGgtatctcttt ... ttatgtacagTGAATTGTCTGCGGTGATGGCAGCAGATGGGGCTGAACCTGGGAGGAACAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATAGCTCTGGAGCTGTTAATGAGGTCACAAATACGATAATGCAAAAGTTTTGGGATTCAACACTTGCTCTAGAGCCACCAGATGATTATGACACCCAGAGgtatctcttttgctaccataattatttgttatatgttggtaaactggtagttcaataactagtcctgttgatgttatgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG