Sequence
atgc intronic sequence ATGC exonic sequenceAATGAAGTTGGACGTGGACGTCTTGCGATACCTTTCCAAAGATGATTTTAGGGTTCTCACTGCTGTTGAAATGGGAATGAGGAATgtatgtgcaaatttgagcgattcttttgaatattatcatttttttatttctttattttgaatatttgataaagataaagagggtctgacatctccatctccacgctttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0094g01560.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA11G33320.1 (Glycine max), 5'ss of exon 1
---------------AATGAAGTTGGACGTGGACGTCTTGCGATACCTTTCCAAAGATGATTTTAGGGTTCTCACTGCTGTTGAAATGGGAATGAGGAATgtatgtgcaaatttgagcgattcttttgaatattatcatttttttatttctttattttgaatatttgataaagataaagagggtctgacatctccatctccacgctttcag
||||||| | ||||| || |||||| |||| || |||||||||||||||||||||||||||||||||||| |||| ||| ||||||| || ||| | | ||||| ||| ||| | | | | |||||| || ||| || ||| | ||| | |
GACCTTTTCATTAAGAATGAAGCTTGACGTAGATGTCTTGAGATATCTCTCCAAAGATGATTTTAGGGTTCTCACTGCTGTTGAATTGGGCATGCGGAATgtgcgtttttctttttcccctccttttaaattccgg-----tttaaatattattttttgagc------cgaaattaatgaaattcttcc--ctctgttgcag---------
upper sequence: Vv05s0094g01560.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA18G04910.1 (Glycine max), 5'ss of exon 1
AATGAAGTTGGACGTGGACGTCTTGCGATACCTTTCCAAAGATGATTTTAGGGTTCTCACTGCTGTTGAAATGGGAATGAGGAATgtatgtgcaaatttgagcgattcttttgaat----attatcatttttttatttctttattttgaatatttga--taaagataaagagggtctgacatctccatctccacgctttcag
|||||| | ||||| || |||||| |||| || ||||||||||||||||||||||||||||| |||||| |||| ||| ||||||| || ||| | | ||||| ||| ||| | | || ||||| | | || ||||| |||| | || ||| ||| || | ||| | | |
-ATGAAGCTCGACGTAGATGTCTTGAGATATCTCTCCAAAGATGATTTTAGGGTTCTCACTGCCGTTGAATTGGGGATGCGGAATGtgcgtttttcttttcccc-tccttttaaattccaattttattattattattattattttctgaattcttgagctgaaattaatgagattcctcc--ctctgttgcagc--------
upper sequence: Vv05s0094g01560.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT3G51270.2 (Arabidopsis thaliana), 5'ss of exon 2
---------------AATGAAGTTGGACGTGGACGTCTTGCGATACCTTTCCAAAGATGATTTTAGGGTTCTCACTGCTGTTGAAATGGGAATGAGGAATgtatgtgcaaatt--tgagcgattctttt-----gaat------attatcattt----ttttatttctttattttgaatatttgataaagataaagagggtctgacatctccatctccacgctttcag
|||||| | |||||| | || ||| |||| | ||||||||||||||| | |||||||||||||| || ||||||||| | || || |||| | | | || || |||| ||| ||| ||||| ||||| ||| |||| | ||| | | || | ||||| | | | | |
CACTGCGGCGTAAAGGATGAAGCTTGACGTGAATGTGTTGAGATATTTATCCAAAGATGATTTTCGAGTTCTCACTGCTGTCGAGATGGGAATGCGAAACgtcagtgctcctctctaatcgcttttttttttttaaattctggaattgacatttagggttttaaccttttgttttactttttttttc----tgaaaatcctctgattttttggtttttgcag------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110427485|gb|EC993924.1|EC993924EST: TGAAATGGGAATGAGGAAT CATGAACTTGTACCTTCAGAGCTCGTGGTTCGCATAGCTTCTCTTAA
genomic: TGAAATGGGAATGAGGAATgtatgtgcaa ... acgctttcagCATGAACTTGTACCTTCAGAGCTCGTGGTTCGCATAGCTTCTCTTAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATGAAGTTGGACGTGGACGTCTTGCGATACCTTTCCAAAGATGATTTTAGGGTTCTCACTGCTGTTGAAATGGGAATGAGGAATgtatgtgcaaatttgagcgattcttttgaatattatcatttttttatttctttattttgaatatttgataaagataaagagggtctgacatctccatctccacgctttcag
- - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT