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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACAAGATGGAGAGAGTCAGAAAGTGGGAGTCATGTCGATTATGACCAGAGGCCCGATGTTTTTCGgtatgtacaggtgcttgtcaaagacgttctaagtttctctctttgttgcag

Basic information

species Selaginella moellendorffii
transcript EFJ31718
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169096720|gb|FE496850.1|FE496850
EST:     CCAGAAAGTGGGAGTCATGTCGATTATGACCAGAGACCCGATGTTTTTCG                         TGGAACTGTGCGGTATGCAAGCGTGCATGCACATTTGGGTCGTACTGGCAG
genomic: TCAGAAAGTGGGAGTCATGTCGATTATGACCAGAGGCCCGATGTTTTTCGgtatgtacag ... tttgttgcagTGGAACTGTGCGGTATGCAAGCGTGCATGCACATTTGGGTCGCACTGGCAG
EST: gi|169114703|gb|FE516900.1|FE516900
EST:     TCAGAAAGTGGGAGTCATGTCGATTATGACCAGAGGCCCGATGTTTTTCG                         TGGAACTGTGCGGTATGCAAGCGTGCATGCACATTTGGGTCGCACTGGCAG
genomic: TCAGAAAGTGGGAGTCATGTCGATTATGACCAGAGGCCCGATGTTTTTCGgtatgtacag ... tttgttgcagTGGAACTGTGCGGTATGCAAGCGTGCATGCACATTTGGGTCGCACTGGCAG
EST: gi|169036770|gb|FE443808.1|FE443808
EST:     TCAGAAAGTGGGAGTCATGTCGATTATGACCAGAGGCCCGATGTTTTTCG                         TGGAACTGTGCGGTATGCAAGCGTGCATGCACATTTGGGTCGCACTGGCAG
genomic: TCAGAAAGTGGGAGTCATGTCGATTATGACCAGAGGCCCGATGTTTTTCGgtatgtacag ... tttgttgcagTGGAACTGTGCGGTATGCAAGCGTGCATGCACATTTGGGTCGCACTGGCAG
EST: gi|169104490|gb|FE503774.1|FE503774
EST:     CCAGAAAGTGGGAGTCATGTCGATTATGACCAGAGACCCGATGTTTTTCG                         TGGAACTGTGCGGTATGCAAGCGTGCATGCACATTTGGGTCGTACTGGCAG
genomic: TCAGAAAGTGGGAGTCATGTCGATTATGACCAGAGGCCCGATGTTTTTCGgtatgtacag ... tttgttgcagTGGAACTGTGCGGTATGCAAGCGTGCATGCACATTTGGGTCGCACTGGCAG
EST: gi|169066653|gb|FE475435.1|FE475435
EST:     TCAGAAAGTGGGAGTCATGTCGATTATGACCAGAGGCCCGATGTTTTTCG                         TGGAACTGTGCGGTATGCAAGCGTGCATGCACATTTGGGTCGCACTGGCAG
genomic: TCAGAAAGTGGGAGTCATGTCGATTATGACCAGAGGCCCGATGTTTTTCGgtatgtacag ... tttgttgcagTGGAACTGTGCGGTATGCAAGCGTGCATGCACATTTGGGTCGCACTGGCAG
EST: gi|169094739|gb|FE491577.1|FE491577
EST:     TCAGAAAGTGGGAGTCATGTCGATTATGACCAGAGGCCCGATGTTTTTCG                         TGGAACTGTGCGGTATGCAAGCGTGCATGCACATTTGGGTCGCACTGGCAG
genomic: TCAGAAAGTGGGAGTCATGTCGATTATGACCAGAGGCCCGATGTTTTTCGgtatgtacag ... tttgttgcagTGGAACTGTGCGGTATGCAAGCGTGCATGCACATTTGGGTCGCACTGGCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 32 (upstream exon), 35 (downstream exon)
Score: 23

CAACAAGATGGAGAGAGTCAGAAAGTGGGAGTCATGTCGATTATGACCAGAGGCCCGATGTTTTTCGgtatgtacag ... tttgttgcagTGGAACTGTGCGGTATGCAAGCGTGCATGCACATTTGGGTCGCACTGGCAGTAGACGAGATGATCTGGAATCGCTTGGATACACGCTAGTGTTTCTCCTT




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