1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGATGTATGGTCTGTTGGATGTATATTTATGGAGCTTTTGAACCGAGAACCATTGTTTCCTGGCAGAGATTACGTGCAGCAGCTGCGTCTCATCACCGAGgtaatgccacacccgtcccctgcttgtttgctccccccatctctcacgtgccatgcgttttgcacag
species | Selaginella moellendorffii |
transcript | EFJ22596 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CATTGTTTCCTGGCAGAGATTACGTGCAGCAGCTGCGTCTCATCACCGAG CTGATTGGATCCCCAGAGGACGCCGACCTGGGATTCTTGAGGAACGACAACEST: gi|169059333|gb|FE467488.1|FE467488
genomic: CATTGTTTCCTGGCAGAGATTACGTGCAGCAGCTGCGTCTCATCACCGAGgtaatgccac ... ttttgcacagCTGATTGGATCCCCAGAGGACGCCGACCTGGGATTCTTGAGGAACGACAAC
EST: CATTGTTTCCTGGCAGAGATTACGTGCAGCAGCTGCGTCTCATCACCGAG CTGATTGGATCCCCAGAGGACGCCGACCTGGGATTCTTGAGGAACGACAACEST: gi|169106377|gb|FE507415.1|FE507415
genomic: CATTGTTTCCTGGCAGAGATTACGTGCAGCAGCTGCGTCTCATCACCGAGgtaatgccac ... ttttgcacagCTGATTGGATCCCCAGAGGACGCCGACCTGGGATTCTTGAGGAACGACAAC
EST: CATTGTTTCCTGGCAGAGATTACGTGCAGCAGCTGCGTCTCATCACCGAG CTGATTGGATCCCCAGAGGACGCCGACCTGGGATTCTTGAGGAACGACAACEST: gi|169043885|gb|FE453824.1|FE453824
genomic: CATTGTTTCCTGGCAGAGATTACGTGCAGCAGCTGCGTCTCATCACCGAGgtaatgccac ... ttttgcacagCTGATTGGATCCCCAGAGGACGCCGACCTGGGATTCTTGAGGAACGACAAC
EST: CATTGTTTCCTGGCAGAGATTACGTGCAGCAGCTGCGTCTCATCACCGAG CTGATTGGATCCCCAGAGGACGCCGACCTGGGATTCTTGAGGAACGACAACEST: gi|169033984|gb|FE442016.1|FE442016
genomic: CATTGTTTCCTGGCAGAGATTACGTGCAGCAGCTGCGTCTCATCACCGAGgtaatgccac ... ttttgcacagCTGATTGGATCCCCAGAGGACGCCGACCTGGGATTCTTGAGGAACGACAAC
EST: CATTGTTTCCTGGCAGAGATTACGTGCAGCAGCTGCGTCTCATCACCGAG CTGATTGGATCCCCAGAGGACGCCGACCTGGGATTCTTGAGGAACGACAAC
genomic: CATTGTTTCCTGGCAGAGATTACGTGCAGCAGCTGCGTCTCATCACCGAGgtaatgccac ... ttttgcacagCTGATTGGATCCCCAGAGGACGCCGACCTGGGATTCTTGAGGAACGACAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGTATGGTCTGTTGGATGTATATTTATGGAGCTTTTGAACCGAGAACCATTGTTTCCTGGCAGAGATTACGTGCAGCAGCTGCGTCTCATCACCGAGgtaatgccacacccgtcccctgcttgtttgctccccccatctctcacgtgccatgcgttttgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC