1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AAAGTTCAAGCAAGGTGACTCTGGCTTCATGTGCTATGACCCCGGAAGAAGTTCAGGTTGGAGCTCTGGCAGGATTAGGCCAACTTGCCTGTCACGTGGGgtatgaattccttattcctatttcaatctcaagaacagtaactcaaaagataattaataactaactacgcatatgaaattcgaagcttcacaattccttt...
species | Physcomitrella patens |
transcript | PP1S98_26V6.3 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTAGGCCAACTTGCCTGTCACGTGGG AGATTTCGACGAAGCAGAGAGTAAAATCACTGAGGCACTTACTCAAGCAGAEST: gi|67698900|gb|BJ959133.1|BJ959133
genomic: TTAGGCCAACTTGCCTGTCACGTGGGgtatgaattc ... gtgcattcagAGATTTCGACGAAGCAGAGAGTAAAATCACTGAGGCACTTACTCAAGCAGA
EST: CTGGCAGGATTAGGCCAACTTGCCTGTCACGTGGG AGATTTCGACGAAGCAGAGAGTAAAATCACTGAGGCACTTACTCAAGCAGAEST: gi|208370667|gb|DC936155.1|DC936155
genomic: CTGGCAGGATTAGGCCAACTTGCCTGTCACGTGGGgtatgaattc ... gtgcattcagAGATTTCGACGAAGCAGAGAGTAAAATCACTGAGGCACTTACTCAAGCAGA
EST: GTTCAGGTTGGAGCTCTGGCAGGATTAGGCCAACTTGCCTGTCACGTGGG AGATTTCGACGAAGCAGAGAGTAAAATCACTGAGGCACTTACTCAAGCAGA
genomic: GTTCAGGTTGGAGCTCTGGCAGGATTAGGCCAACTTGCCTGTCACGTGGGgtatgaattc ... gtgcattcagAGATTTCGACGAAGCAGAGAGTAAAATCACTGAGGCACTTACTCAAGCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGTTCAAGCAAGGTGACTCTGGCTTCATGTGCTATGACCCCGGAAGAAGTTCAGGTTGGAGCTCTGGCAGGATTAGGCCAACTTGCCTGTCACGTGGGgtatgaattccttattcctatttcaatctcaagaacagtaactcaaaagataattaataactaactacgcatatgaaattcgaagcttcacaattccttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT