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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGACTCTTTTCATGTTTTGCGAAGGAGTGACCCTCCATTTGTGACGCCTTCTTCTCTCCTACAACAAGGCCTTTCGCCTCTGgtaatcttgttgctccttcgttgtttcagaatgagttcatttgtaagcttatcaagctgctcctttgtaacttgagttacacgtactttcttcttctctcactgttgttttcttaatagttaacacggcttgtttacgatgttgcctctgcag

Basic information

species Physcomitrella patens
transcript PP1S98_119V6.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100419953|gb|BY975905.1|BY975905
EST:     CTCCATTTGTGACGCCTTCTTCTCTCCTACAACAAGGCCTTTCGCCTCTG                         GTGACTTTTTTGGTTACCCATTTCAGTGATGCCCGCATAGCANATTCAGAT
genomic: CTCCATTTGTGACGCCTTCTTCTCTCCTACAACAAGGCCTTTCGCCTCTGgtaatcttgt ... gcctctgcagGTGACTTTTTTGGTTACCCATTTCAGTGATGCCCGCATAGCAAATTCAGAT
EST: gi|162255850|gb|FC431926.1|FC431926
EST:     CTCCATTTGTGACGCCTTCTTCTCTCCTACAACAAGGCCTTTCGCCTCTG                         GTGACTTTTTTGGTTACCCATTTCAGTGATGCCCGCATAGCAAATTCAGAT
genomic: CTCCATTTGTGACGCCTTCTTCTCTCCTACAACAAGGCCTTTCGCCTCTGgtaatcttgt ... gcctctgcagGTGACTTTTTTGGTTACCCATTTCAGTGATGCCCGCATAGCAAATTCAGAT