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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAATCTGGCTACACATTTGTTACGCTGACGTGCAACATCCTTATGTGCGTGATCGTCTTGCTCTTTGTCTGGTCGAGCATTGCCGCGCTTCTTCACAGgtacttaactaaaacaccatgtttgtcagttaattcgtcccttgccgtacaacgtataacatgtgcaccatgtacaccgcgattgttttagctatatttt...

Basic information

species Physcomitrella patens
transcript PP1S421_1V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18360492|gb|BJ192555.1|BJ192555
EST:     GTGATCGTCTTGCTCTTTGTCTGGTCGAGCATTGCCGCGCTTCTTCACAG                         GGCTGGTCCACCGGTACCGGGAGCTGTCTCTCTCCGAAAGTTTTGTTATGA
genomic: GTGATCGTCTTGCTCTTTGTCTGGTCGAGCATTGCCGCGCTTCTTCACAGgtacttaact ... atgtgatcagGGCTGGTCCACCGGTACCGG-AGCTGTCTCTCTCCGAAAGTTTTGTTATGA
EST: gi|100416134|gb|BY957093.1|BY957093
EST:     TGATCGTCTTGCTCTTTGTCTGGTCGAGCATTGCCGCGCTTTCTTCACAG                         GGCTGGTCCACCGGTACCGGAGCTGTCTCTCTCCGAAAGTTTTGTTATGAA
genomic: TGATCGTCTTGCTCTTTGTCTGGTCGAGCATTGCCGCGCTT-CTTCACAGgtacttaact ... atgtgatcagGGCTGGTCCACCGGTACCGGAGCTGTCTCTCTCCGAAAGTTTTGTTATGAA
EST: gi|208394184|gb|DC929671.1|DC929671
EST:     GTGATCGTCTTGCTCTTTGTCTGGTCGAGCATTGCCGCGCTTCTTCACAG                         GGCTGGTCCACCGGTACCGGAGCTGTCTCTCTCCGAAAGTTTTGTTATGAA
genomic: GTGATCGTCTTGCTCTTTGTCTGGTCGAGCATTGCCGCGCTTCTTCACAGgtacttaact ... atgtgatcagGGCTGGTCCACCGGTACCGGAGCTGTCTCTCTCCGAAAGTTTTGTTATGAA
EST: gi|208369800|gb|DC944208.1|DC944208
EST:     GTGATCGTCTTGCTCTTTGTCTGGTCGAGCATTGCCGCGCTTCTTCACAG                         GGCTGGTCCACCGGTACCGGAGCTGTCTCTCTCCGAAAGTTTTGTTATGAA
genomic: GTGATCGTCTTGCTCTTTGTCTGGTCGAGCATTGCCGCGCTTCTTCACAGgtacttaact ... atgtgatcagGGCTGGTCCACCGGTACCGGAGCTGTCTCTCTCCGAAAGTTTTGTTATGAA