1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CAAGCGTTTGCTGTAATTGTTGACCACGCAAACACGCCGGATGGACTTTCGAGATTGTTAGATACAGTGCGAGAGTGTGGTCCAAGGAGAATTATCACAGgtatacttctctcttttgttgatgacagatatatgtgtttatcgcttagaatactctaaagaaatgaggggaacttgtataagtgttggtaagagtgttcgcctaatttaaaatgttatttttgggggttttgcag
species | Physcomitrella patens |
transcript | PP1S101_215V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAGATTGTTAGATACAGTGCGAGAGTGTGGTCCAAGGAGAATTATCACAG TGCTGGGATCCCAGGGCGATCGAGACAAAGCCAAACGACCTCTGATGGCTAEST: gi|162149663|gb|FC326714.1|FC326714
genomic: GAGATTGTTAGATACAGTGCGAGAGTGTGGTCCAAGGAGAATTATCACAGgtatacttct ... ggttttgcagTGCTGGGATCCCAGGGCGATCGAGACAAAGCCAAACGACCTCTGATGGCTA
EST: GAGATTGTTAGATACAGTGCGAGAGTGTGGTCCAAGGAGAATTATCACAG TGCTGGGATCCCAGGGCGATCGAGACAAAGCCAAACGACCTCTGATGGCTA
genomic: GAGATTGTTAGATACAGTGCGAGAGTGTGGTCCAAGGAGAATTATCACAGgtatacttct ... ggttttgcagTGCTGGGATCCCAGGGCGATCGAGACAAAGCCAAACGACCTCTGATGGCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGCGTTTGCTGTAATTGTTGACCACGCAAACACGCCGGATGGACTTTCGAGATTGTTAGATACAGTGCGAGAGTGTGGTCCAAGGAGAATTATCACAGgtatacttctctcttttgttgatgacagatatatgtgtttatcgcttagaatactctaaagaaatgaggggaacttgtataagtgttggtaagagtgttcgcctaatttaaaatgttatttttgggggttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA