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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactggtctaacttcttactcttcagaatttttcataatttaatgcgccacaatgcaatcttagtgttctatgctttgacatttgtttgttgctcttgcagGTGCGTTCTACGGGCATCCTTCTAAGAACCTAGCCGTTGTAGGCATCACAGGAACAAATGGGAAGGCCACAACCTCATATCTTATCCGGAGTATATACGA

Basic information

species Physcomitrella patens
transcript PP1S101_215V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162179777|gb|FC356368.1|FC356368
EST:     AGCCTCTGTGGTTGTCGAGGACACTAATATCTTGCTCTCTGGACTTGCAG                         GTGCGTTCTACGGGCATCCTTCTAAGAACCTAGCCGTTGTAGGCATCACAG
genomic: AGCCTCTGTGGTTGTCGAGGACACTAATATCTTGCTCTCTGGACTTGCAGgtactggtct ... gctcttgcagGTGCGTTCTACGGGCATCCTTCTAAGAACCTAGCCGTTGTAGGCATCACAG
EST: gi|162257165|gb|FC433041.1|FC433041
EST:     AGCCTCTGTGGTTGTCGAGGACACTAATATCTTGCTCTCTGGACTTGCAG                         GTGCGTTCTACGGGCATCCTTCTAAGAACCTAGCCGTTGTAGGCATCACAG
genomic: AGCCTCTGTGGTTGTCGAGGACACTAATATCTTGCTCTCTGGACTTGCAGgtactggtct ... gctcttgcagGTGCGTTCTACGGGCATCCTTCTAAGAACCTAGCCGTTGTAGGCATCACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccacaatgcaatcttagtgttctatgctttgacatttgtttgttgctcttgcagGTGCGTTCTACGGGCATCCTTCTAAGAACCTAGCCGTTGTAGGCATCACAGGAACAAATGGGAAGGCCACAACCTCATATCTTATCCGGAGTATATACGA
                           ctttgac  putative branch site (score: 4)
                                           ttgctctt  putative PPT
                                  atttgttt  TA-rich tract