Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacttctctcttttgttgatgacagatatatgtgtttatcgcttagaatactctaaagaaatgaggggaacttgtataagtgttggtaagagtgttcgcctaatttaaaatgttatttttgggggttttgcagTGCTGGGATCCCAGGGCGATCGAGACAAAGCCAAACGACCTCTGATGGCTAAAATTGCTACCGACAAAAGTGATGTATGTATATTTACATCTGACAATCC

Basic information

species Physcomitrella patens
transcript PP1S101_215V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162175467|gb|FC351743.1|FC351743
EST:     GAGATTGTTAGATACAGTGCGAGAGTGTGGTCCAAGGAGAATTATCACAG                         TGCTGGGATCCCAGGGCGATCGAGACAAAGCCAAACGACCTCTGATGGCTA
genomic: GAGATTGTTAGATACAGTGCGAGAGTGTGGTCCAAGGAGAATTATCACAGgtatacttct ... ggttttgcagTGCTGGGATCCCAGGGCGATCGAGACAAAGCCAAACGACCTCTGATGGCTA
EST: gi|162149663|gb|FC326714.1|FC326714
EST:     GAGATTGTTAGATACAGTGCGAGAGTGTGGTCCAAGGAGAATTATCACAG                         TGCTGGGATCCCAGGGCGATCGAGACAAAGCCAAACGACCTCTGATGGCTA
genomic: GAGATTGTTAGATACAGTGCGAGAGTGTGGTCCAAGGAGAATTATCACAGgtatacttct ... ggttttgcagTGCTGGGATCCCAGGGCGATCGAGACAAAGCCAAACGACCTCTGATGGCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgttggtaagagtgttcgcctaatttaaaatgttatttttgggggttttgcagTGCTGGGATCCCAGGGCGATCGAGACAAAGCCAAACGACCTCTGATGGCTAAAATTGCTACCGACAAAAGTGATGTATGTATATTTACATCTGACAATCC
                   gcctaat  putative branch site (score: 3)
                      taatttaaaatgttat  TA-rich tract