1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCCAAGGGTGTGTTGCTGGTTGGTCCTCCTGGAACTGGAAAAACTCTCCTGGCTAAGGCCATCGCCGGAGAGGCGGGAGTTCCGTTCTTCTCAATTTCAGgtccgttgccaatcctgtctactagaataatcgacagacggtaattgtcaccaattgtatgtctgtttgcggcctctggtgttcattattcgattgatcggtgcag
species | Physcomitrella patens |
transcript | PP1S9_115V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGCTAAGGCCATCGCCGGAGAGGCGGGAGTTCCGTTCTTCTCAATTTCAG GTTCTGAATTCGTTGAGATGTTCGTGGGAGTTGGTGCATCACGAGTGCGTGEST: gi|162268414|gb|FC444183.1|FC444183
genomic: GGCTAAGGCCATCGCCGGAGAGGCGGGAGTTCCGTTCTTCTCAATTTCAGgtccgttgcc ... atcggtgcagGTTCTGAATTCGTTGAGATGTTCGTGGGAGTTGGTGCATCACGAGTGCGTG
EST: GGCTAAGGCCATCGCCGGAGAGGCGGGAGTTCCGTTCTTCTCAATTTCAG GTTCTGAATTCGTTGAGATGTTCGTGGGAGTTGGTGCATCACGAGTGCGTGEST: gi|162273611|gb|FC449340.1|FC449340
genomic: GGCTAAGGCCATCGCCGGAGAGGCGGGAGTTCCGTTCTTCTCAATTTCAGgtccgttgcc ... atcggtgcagGTTCTGAATTCGTTGAGATGTTCGTGGGAGTTGGTGCATCACGAGTGCGTG
EST: GGCTAAGGCCATCGCCGGAGAGGCGGGAGTTCCGTTCTTCTCAATTTCAG GTTCTGAATTCGTTGAGATGTTCGTGGGAGTTGGTGCATCACGAGTGCGTGEST: gi|162199339|gb|FC374018.1|FC374018
genomic: GGCTAAGGCCATCGCCGGAGAGGCGGGAGTTCCGTTCTTCTCAATTTCAGgtccgttgcc ... atcggtgcagGTTCTGAATTCGTTGAGATGTTCGTGGGAGTTGGTGCATCACGAGTGCGTG
EST: GGCTAAGGCCATCGCCGGAGAGGCGGGAGTTCCGTTCTTCTCAATTTCAG GTTCTGAATTCGTTGAGATGTTCGTGGGAGTTGGTGCATCACGAGTGCGTGEST: gi|162194020|gb|FC370195.1|FC370195
genomic: GGCTAAGGCCATCGCCGGAGAGGCGGGAGTTCCGTTCTTCTCAATTTCAGgtccgttgcc ... atcggtgcagGTTCTGAATTCGTTGAGATGTTCGTGGGAGTTGGTGCATCACGAGTGCGTG
EST: GGCTAAGGCCATCGCCGGAGAGGCGGGAGTTCCGTTCTTCTCAATTTCAG GTTCTGAATTCGTTGAGATGTTCGTGGGAGTTGGTGCATCACGAGTGCGTG
genomic: GGCTAAGGCCATCGCCGGAGAGGCGGGAGTTCCGTTCTTCTCAATTTCAGgtccgttgcc ... atcggtgcagGTTCTGAATTCGTTGAGATGTTCGTGGGAGTTGGTGCATCACGAGTGCGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCAAGGGTGTGTTGCTGGTTGGTCCTCCTGGAACTGGAAAAACTCTCCTGGCTAAGGCCATCGCCGGAGAGGCGGGAGTTCCGTTCTTCTCAATTTCAGgtccgttgccaatcctgtctactagaataatcgacagacggtaattgtcaccaattgtatgtctgtttgcggcctctggtgttcattattcgattgatcggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG