1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCAGAGCTCCTAGTGCGGACTCCCCGGGGGAATCTGGAAATCTCCTCGGGGCTGCTAGGGCGACACAACGTGTACAATATTCTCGCTGCCGTTGCAGTCGgtgagctgctcccccttcaaagacctctattattcttctgtagtgtatgcttgtttgcaatcttgaacatcaagtctttctgtttctttctgagaatctc...
species | Physcomitrella patens |
transcript | PP1S101_215V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCTGCTAGGGCGACACAACGTGTACAATATTCTCGCTGCCGTTGCAGTCG GTATTGCTGTGGATGCTCCTCTEST: gi|162175467|gb|FC351743.1|FC351743
genomic: GCTGCTAGGGCGACACAACGTGTACAATATTCTCGCTGCCGTTGCAGTCGgtgagctgct ... atatgtgtagGTATTGCTGTGGATGCTCCTCT
EST: GCTGCTAGGGCGACACAACGTGTACAATATTCTCGCTGCCGTTGCAGTCG GTATTGCTGTGGATGCTCCTCTAGAGGACATAGTTCGGGGTATCGAGGAAGEST: gi|162206881|gb|FC382743.1|FC382743
genomic: GCTGCTAGGGCGACACAACGTGTACAATATTCTCGCTGCCGTTGCAGTCGgtgagctgct ... atatgtgtagGTATTGCTGTGGATGCTCCTCTAGAGGACATAGTTCGGGGTATCGAGGAAG
EST: GCTGCTAGGGCGACACAACGTGTACAATATTCTCGCTGCCGTTGCAGTCG GTATTGCTGTGGATGCTCCTCTAGAGGACATAGTTCGGGGTATCGAGGAAGEST: gi|162149663|gb|FC326714.1|FC326714
genomic: GCTGCTAGGGCGACACAACGTGTACAATATTCTCGCTGCCGTTGCAGTCGgtgagctgct ... atatgtgtagGTATTGCTGTGGATGCTCCTCTAGAGGACATAGTTCGGGGTATCGAGGAAG
EST: GCTGCTAGGGCGACACAACGTGTACAATATTCTCGCTGCCGTTGCAGTCG GTATTGCTGTGGATGCTCCTCTAGAGGACATAGTTCGGGGTATCGAGGAAG
genomic: GCTGCTAGGGCGACACAACGTGTACAATATTCTCGCTGCCGTTGCAGTCGgtgagctgct ... atatgtgtagGTATTGCTGTGGATGCTCCTCTAGAGGACATAGTTCGGGGTATCGAGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGAGCTCCTAGTGCGGACTCCCCGGGGGAATCTGGAAATCTCCTCGGGGCTGCTAGGGCGACACAACGTGTACAATATTCTCGCTGCCGTTGCAGTCGgtgagctgctcccccttcaaagacctctattattcttctgtagtgtatgcttgtttgcaatcttgaacatcaagtctttctgtttctttctgagaatctc
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT