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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGAGCTCCTAGTGCGGACTCCCCGGGGGAATCTGGAAATCTCCTCGGGGCTGCTAGGGCGACACAACGTGTACAATATTCTCGCTGCCGTTGCAGTCGgtgagctgctcccccttcaaagacctctattattcttctgtagtgtatgcttgtttgcaatcttgaacatcaagtctttctgtttctttctgagaatctc...

Basic information

species Physcomitrella patens
transcript PP1S101_215V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162179777|gb|FC356368.1|FC356368
EST:     GCTGCTAGGGCGACACAACGTGTACAATATTCTCGCTGCCGTTGCAGTCG                         GTATTGCTGTGGATGCTCCTCT
genomic: GCTGCTAGGGCGACACAACGTGTACAATATTCTCGCTGCCGTTGCAGTCGgtgagctgct ... atatgtgtagGTATTGCTGTGGATGCTCCTCT
EST: gi|162175467|gb|FC351743.1|FC351743
EST:     GCTGCTAGGGCGACACAACGTGTACAATATTCTCGCTGCCGTTGCAGTCG                         GTATTGCTGTGGATGCTCCTCTAGAGGACATAGTTCGGGGTATCGAGGAAG
genomic: GCTGCTAGGGCGACACAACGTGTACAATATTCTCGCTGCCGTTGCAGTCGgtgagctgct ... atatgtgtagGTATTGCTGTGGATGCTCCTCTAGAGGACATAGTTCGGGGTATCGAGGAAG
EST: gi|162206881|gb|FC382743.1|FC382743
EST:     GCTGCTAGGGCGACACAACGTGTACAATATTCTCGCTGCCGTTGCAGTCG                         GTATTGCTGTGGATGCTCCTCTAGAGGACATAGTTCGGGGTATCGAGGAAG
genomic: GCTGCTAGGGCGACACAACGTGTACAATATTCTCGCTGCCGTTGCAGTCGgtgagctgct ... atatgtgtagGTATTGCTGTGGATGCTCCTCTAGAGGACATAGTTCGGGGTATCGAGGAAG
EST: gi|162149663|gb|FC326714.1|FC326714
EST:     GCTGCTAGGGCGACACAACGTGTACAATATTCTCGCTGCCGTTGCAGTCG                         GTATTGCTGTGGATGCTCCTCTAGAGGACATAGTTCGGGGTATCGAGGAAG
genomic: GCTGCTAGGGCGACACAACGTGTACAATATTCTCGCTGCCGTTGCAGTCGgtgagctgct ... atatgtgtagGTATTGCTGTGGATGCTCCTCTAGAGGACATAGTTCGGGGTATCGAGGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAGAGCTCCTAGTGCGGACTCCCCGGGGGAATCTGGAAATCTCCTCGGGGCTGCTAGGGCGACACAACGTGTACAATATTCTCGCTGCCGTTGCAGTCGgtgagctgctcccccttcaaagacctctattattcttctgtagtgtatgcttgtttgcaatcttgaacatcaagtctttctgtttctttctgagaatctc

- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT