1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CAACCAGCTCAAGCCTTTGCGTATTCTCTTCTGCGGGGATGAATTCCCTGCTGCGGAGTTTTACACTCGGAAGAATTTGCAACAATACCCACATCTTCATgtacgttagtcttgtcgtttcgctgaatttctatgcatttccttgcttgagtccctcgcagtaaggatgccaatgcgaacgaggctttcgacagtgctct...
species | Physcomitrella patens |
transcript | PP1S93_138V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTGCGGAGTTTTACACTCGGAAGAATTTGCAACAATACCCACATCTTCAT TTGGATTCTTGTCCCAGGACGTTAGTGGCTGATCGGATAGGAGATTATGACEST: gi|100391012|gb|BY953022.1|BY953022
genomic: CTGCGGAGTTTTACACTCGGAAGAATTTGCAACAATACCCACATCTTCATgtacgttagt ... tgcacggcagTTGGATTCTTGTCCCAGGACGTTAGTGGCTGATCGGATAGGAGATTATGAC
EST: CTGCGGAGTTTTACACTCGGAAGAATTTGCAACAATACCCACATCTTCAT TTGGATTCTTGTCCCAGGACGTTAGTGGCTGATCGGATAGGAGATTATGACEST: gi|100447037|gb|CJ971336.1|CJ971336
genomic: CTGCGGAGTTTTACACTCGGAAGAATTTGCAACAATACCCACATCTTCATgtacgttagt ... tgcacggcagTTGGATTCTTGTCCCAGGACGTTAGTGGCTGATCGGATAGGAGATTATGAC
EST: CTGCGGAGTTTTACACTCGGAAGAATTTGCAACAATACCCACATCTTCAT TTGGATTCTTGTCCCAGGACGTTAGTGGCTGATCGGATAGGAGATTATGACEST: gi|18372772|gb|BJ204374.1|BJ204374
genomic: CTGCGGAGTTTTACACTCGGAAGAATTTGCAACAATACCCACATCTTCATgtacgttagt ... tgcacggcagTTGGATTCTTGTCCCAGGACGTTAGTGGCTGATCGGATAGGAGATTATGAC
EST: CTGCGGAGTTTTACACTCGGAAGAATTTGCAACAATACCCACATCTTCAT TTGGATTCTTGTCCCAGGACGTTAGTGGCTGATCGGATAGGAGATTATGACEST: gi|162228915|gb|FC404201.1|FC404201
genomic: CTGCGGAGTTTTACACTCGGAAGAATTTGCAACAATACCCACATCTTCATgtacgttagt ... tgcacggcagTTGGATTCTTGTCCCAGGACGTTAGTGGCTGATCGGATAGGAGATTATGAC
EST: CTCGGAAGAATTTGCAACAATACCCACATCTTCAT TTGGATTCTTGTCCCAGGACGTTAGTGGCTGATCGGATAGGAGATTATGACEST: gi|208371164|gb|DC931596.1|DC931596
genomic: CTCGGAAGAATTTGCAACAATACCCACATCTTCATgtacgttagt ... tgcacggcagTTGGATTCTTGTCCCAGGACGTTAGTGGCTGATCGGATAGGAGATTATGAC
EST: CTGCGGAGTTTTACACTCGGAAGAATTTGCAACAATACCCACATCTTCAT TTGGATTCTTGTCCCAGGACGTTAGTGGCTGATCGGATAGGAGATTATGACEST: gi|18367318|gb|BJ199400.1|BJ199400
genomic: CTGCGGAGTTTTACACTCGGAAGAATTTGCAACAATACCCACATCTTCATgtacgttagt ... tgcacggcagTTGGATTCTTGTCCCAGGACGTTAGTGGCTGATCGGATAGGAGATTATGAC
EST: CTGCGGAGTTTTACACTCGGAAGAATTTGCAACAATACCCACATCTTCAT TTGGATTCTTGTCCCANGACGTTAGTGGCTGATCGGATAGGAGATTATGACEST: gi|100379739|gb|BY949920.1|BY949920
genomic: CTGCGGAGTTTTACACTCGGAAGAATTTGCAACAATACCCACATCTTCATgtacgttagt ... tgcacggcagTTGGATTCTTGTCCCAGGACGTTAGTGGCTGATCGGATAGGAGATTATGAC
EST: CTGCGGAGTTTTACACTCGGAAGAATTTGCAACAATACCCACATCTTCAT TTGGATTCTTGTCCCAGGACGTTAGTGGCTGATCGGATAGGAGATTATGACEST: gi|100411709|gb|BY992302.1|BY992302
genomic: CTGCGGAGTTTTACACTCGGAAGAATTTGCAACAATACCCACATCTTCATgtacgttagt ... tgcacggcagTTGGATTCTTGTCCCAGGACGTTAGTGGCTGATCGGATAGGAGATTATGAC
EST: CTGCGGAGTTTTACACTCGGAAGAATTTGCAACAATACCCACATCTTCAT TTGGATTCTTGTCCCAGGACGTCAGTGGCTGATCGGATAGGAGATTATGAC
genomic: CTGCGGAGTTTTACACTCGGAAGAATTTGCAACAATACCCACATCTTCATgtacgttagt ... tgcacggcagTTGGATTCTTGTCCCAGGACGTTAGTGGCTGATCGGATAGGAGATTATGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACCAGCTCAAGCCTTTGCGTATTCTCTTCTGCGGGGATGAATTCCCTGCTGCGGAGTTTTACACTCGGAAGAATTTGCAACAATACCCACATCTTCATgtacgttagtcttgtcgtttcgctgaatttctatgcatttccttgcttgagtccctcgcagtaaggatgccaatgcgaacgaggctttcgacagtgctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA