1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGGAACAACCATGGATCCAACCTTGACACGTGCTGATAGACTGGTTGGTCAGGTTCTAGGTGAAGTTGGATCACTTCCTGATGTCTATGTGGAGCTTGAGgtttgtcaactcttcgttgcatcaagatttagtgagaataaaacattcattgcttaaatctggactttcatgcatgcag
species | Oryza sativa |
transcript | LOC_Os12g41400.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAGTTGGATCACTTCCTGATGTCTATGTGGAGCTTGAG ATCAACTTCTTCCTTCTTCGGAGGCTGTTGGGTGTGAGGACAAAAGGTACTEST: gi|89190462|gb|CI015427.1|CI015427
genomic: AAGTTGGATCACTTCCTGATGTCTATGTGGAGCTTGAGgtttgtcaac ... atgcatgcagATCAACTTCTTCCTTCTTCGGAGGCTGTTGGGTGTGAGGACAAAAGGTACT
EST: GTGAAGTTGGATCACTTCCTGATGTCTATGTGGAGCTTGAG ATCAACTTCTTCCTTCTTCGGAGGCTGTTGGGTGTGAGGACAAAAGGTACTEST: gi|58604734|gb|CK015262.1|CK015262
genomic: GTGAAGTTGGATCACTTCCTGATGTCTATGTGGAGCTTGAGgtttgtcaac ... atgcatgcagATCAACTTCTTCCTTCTTCGGAGGCTGTTGGGTGTGAGGACAAAAGGTACT
EST: AGGTTCTAGGTGAAGTTGGATCACTTCCTGATGTCTATGTGGAGCTTGAG ATCAACTTCTTCCTTCTTCGGAGGCTGTTGGGTGTGAGGACAAAAGGTACTEST: gi|88956858|gb|CI009080.1|CI009080
genomic: AGGTTCTAGGTGAAGTTGGATCACTTCCTGATGTCTATGTGGAGCTTGAGgtttgtcaac ... atgcatgcagATCAACTTCTTCCTTCTTCGGAGGCTGTTGGGTGTGAGGACAAAAGGTACT
EST: AGGTTCTAGGTGAAGTTGGATCACTTCCTGATGTCTATGTGGAGCTTGAG ATCAACTTCTTCCTTCTTCGGAGGCTGTTGGGTGTGAGGACAAAAGGTACTEST: gi|88844481|gb|CI020328.1|CI020328
genomic: AGGTTCTAGGTGAAGTTGGATCACTTCCTGATGTCTATGTGGAGCTTGAGgtttgtcaac ... atgcatgcagATCAACTTCTTCCTTCTTCGGAGGCTGTTGGGTGTGAGGACAAAAGGTACT
EST: TGTCTATGTGGAGCTTGAG ATCAACTTCTTCCTTCTTCGGAGGCTGTTGGGTGTGAGGACAAAAGGTACTEST: gi|88955470|gb|CI091562.1|CI091562
genomic: TGTCTATGTGGAGCTTGAGgtttgtcaac ... atgcatgcagATCAACTTCTTCCTTCTTCGGAGGCTGTTGGGTGTGAGGACAAAAGGTACT
EST: TATGTGGAGCTTGAG ATCAACTTCTTCCTTCTTCGGAGGCTGTTGGGTGTGAGGACAAAAGGTACTEST: gi|218504380|gb|FG947139.1|FG947139
genomic: TATGTGGAGCTTGAGgtttgtcaac ... atgcatgcagATCAACTTCTTCCTTCTTCGGAGGCTGTTGGGTGTGAGGACAAAAGGTACT
EST: AGGTTCTAGGTGAAGTTGGATCACTTCCTGATGTCTATGTGGAGCTTGAG ATCAACTTCTTCCTTCTTCGGAGGCTGTTGGGTGTG
genomic: AGGTTCTAGGTGAAGTTGGATCACTTCCTGATGTCTATGTGGAGCTTGAGgtttgtcaac ... atgcatgcagATCAACTTCTTCCTTCTTCGGAGGCTGTTGGGTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGAACAACCATGGATCCAACCTTGACACGTGCTGATAGACTGGTTGGTCAGGTTCTAGGTGAAGTTGGATCACTTCCTGATGTCTATGTGGAGCTTGAGgtttgtcaactcttcgttgcatcaagatttagtgagaataaaacattcattgcttaaatctggactttcatgcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT