1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TAGACTTTATTTCTCTACCCAACATTCTTTTAAACTCTCCAATTGTCCCTGAGATCCTTTTTGGGGCTTGCACAGCGGAAAATCTAGCTGCAAAACTAAGgtaatgtcccccacccaaagaaaaaactcatagatatgaacatagttatctcccatggatagcatccatatgggtataggtagcagtattcatatagatt...
species | Oryza sativa |
transcript | LOC_Os01g54900.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAGATCCTTTTTGGGGCTTGCACAGCGGAAAATCTAGCTGCAAAACTAAG TGAGGTCATTTGTAATGATGAAGCCCGTCAGCTCCAAGTTGAATCAGCTGAEST: gi|58679315|gb|CK068002.1|CK068002
genomic: GAGATCCTTTTTGGGGCTTGCACAGCGGAAAATCTAGCTGCAAAACTAAGgtaatgtccc ... atctgaccagTGAGGTCATTTGTAATGATGAAGCCCGTCAGCTCCAAGTTGAATCAGCTGA
EST: AGATCCTTTTGGGGGGCTTGCACAGCGGAAAATCTAGCTGCAAAACTAAG TGAGGTCATTTGTAATGATGAAGCCCGTCAGCTCCAAGTTGAATCAGCTGA
genomic: AGATCCTTTTTGGGG-CTTGCACAGCGGAAAATCTAGCTGCAAAACTAAGgtaatgtccc ... atctgaccagTGAGGTCATTTGTAATGATGAAGCCCGTCAGCTCCAAGTTGAATCAGCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGACTTTATTTCTCTACCCAACATTCTTTTAAACTCTCCAATTGTCCCTGAGATCCTTTTTGGGGCTTGCACAGCGGAAAATCTAGCTGCAAAACTAAGgtaatgtcccccacccaaagaaaaaactcatagatatgaacatagttatctcccatggatagcatccatatgggtataggtagcagtattcatatagatt
- - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaa