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TCGGCGGGGCGTTGTCCCTGCATCTGGTTTCTCTTTCAGTTCACAACAATTTTGGAAGGTCATTAAGGAGAATAAAGACCTTGATCTACCAGCTCATAAAgtaagcatccttgcccctttcagtagcgagttatcaaaattatgcatgctgacatcttttgcgcatttaattcag
species | Oryza sativa |
transcript | LOC_Os01g39310.3 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TTTGGAAGGTCATTAAGGAGAATAAAGACCTTGATCTACCAGCTCATAAA GTTATGGTCG-TACTGTACGCTGTGAGGAAATCGGTAATGAGAAAATTGCCEST: gi|426285|gb|D22147.1|D22147
genomic: TTTGGAAGGTCATTAAGGAGAATAAAGACCTTGATCTACCAGCTCATAAAgtaagcatcc ... tttaattcagGTTATGGTCGCTACTGTACGCTGTGAGGAAATCGGTAATGAGAAAATTGCC
EST: GGAAGGTCATTAAGGAGAATAAAGACCTTGATCTACCAGCTCATAAA GTTATGGTCGCTACTGTACGCTGTGAGGAAATCGGTAATGAGAAAATTGCCEST: gi|88665693|gb|CI715849.1|CI715849
genomic: GGAAGGTCATTAAGGAGAATAAAGACCTTGATCTACCAGCTCATAAAgtaagcatcc ... tttaattcagGTTATGGTCGCTACTGTACGCTGTGAGGAAATCGGTAATGAGAAAATTGCC
EST: TTTTGAAGGTCATTAAGGAGAATAAAGACCTTGATCTACCAGCTCATAAA GTTATGGTCGCTACTGTACGCTGTGAGGAAATCGGTAATGAGAAAATTGCCEST: gi|88364128|gb|CI610472.1|CI610472
genomic: TTTGGAAGGTCATTAAGGAGAATAAAGACCTTGATCTACCAGCTCATAAAgtaagcatcc ... tttaattcagGTTATGGTCGCTACTGTACGCTGTGAGGAAATCGGTAATGAGAAAATTGCC
EST: TTTGGAAGGTCATTAAGGAGAATAAAGACCTTGATCTACCAGCTCATAAA GTTATGGTCGCTACTGTACGCTGTGAGGAAATCGGTAATGAGAAAATTGCC
genomic: TTTGGAAGGTCATTAAGGAGAATAAAGACCTTGATCTACCAGCTCATAAAgtaagcatcc ... tttaattcagGTTATGGTCGCTACTGTACGCTGTGAGGAAATCGGTAATGAGAAAATTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGGCGGGGCGTTGTCCCTGCATCTGGTTTCTCTTTCAGTTCACAACAATTTTGGAAGGTCATTAAGGAGAATAAAGACCTTGATCTACCAGCTCATAAAgtaagcatccttgcccctttcagtagcgagttatcaaaattatgcatgctgacatcttttgcgcatttaattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA