1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAGCCGGAGCCGCCGCTGCCACCTCCTCCTCCTCGATCCGCCGCTGCCTCCCCGAGTTCGTCGTCCACCGCTGATCGGCCAACCCGAGGAACCTTCGACGgtgagcctcgtgtactctcgtattactcactcttcctgttttccatggcaaatttttgttgcttttatttggatgcacgcgtgttactgaatgatgatga...
species | Oryza sativa |
transcript | LOC_Os12g41400.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCCGAGTTCGTCGTCCACCGCTGATCGGCCAACCCGAGGAACCTTCGACG TTTCAAACATGTCTCGCCGAGGATTGATGGAGCAGGACTTAAGCAAGCTTGEST: gi|58667751|gb|CK056437.1|CK056437
genomic: CCCGAGTTCGTCGTCCACCGCTGATCGGCCAACCCGAGGAACCTTCGACGgtgagcctcg ... atttttgcagTTTCAAACATGTCTCGCCGAGGATTGATGGAGCAGGACTTAAGCAAGCTTG
EST: CCCGAGTTCGTCGTCCACCGCTGATCGGCCAACCCGAGGAACCTTCGACG TTTCAAACATGTCTCGCCGAGGATTGATGGAGCAGGACTTAAGCAAGCTTGEST: gi|58681240|gb|CK069927.1|CK069927
genomic: CCCGAGTTCGTCGTCCACCGCTGATCGGCCAACCCGAGGAACCTTCGACGgtgagcctcg ... atttttgcagTTTCAAACATGTCTCGCCGAGGATTGATGGAGCAGGACTTAAGCAAGCTTG
EST: CCCGAGTTCGTCGTCCACCGCTGATCGGCCAACCCGAGGAACCTTCGACG TTTCAAACATGTCTCGCCGAGGATTGATGGAGCAGGACTTAAGCAAGCTTG
genomic: CCCGAGTTCGTCGTCCACCGCTGATCGGCCAACCCGAGGAACCTTCGACGgtgagcctcg ... atttttgcagTTTCAAACATGTCTCGCCGAGGATTGATGGAGCAGGACTTAAGCAAGCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCCGGAGCCGCCGCTGCCACCTCCTCCTCCTCGATCCGCCGCTGCCTCCCCGAGTTCGTCGTCCACCGCTGATCGGCCAACCCGAGGAACCTTCGACGgtgagcctcgtgtactctcgtattactcactcttcctgttttccatggcaaatttttgttgcttttatttggatgcacgcgtgttactgaatgatgatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT