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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCGCACCTACTCTAGCCTTTGTTCAGTGGTACGAGGCGCCGCGCGAGCCTGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAGgtacgtacgagccccccctcggccgagttactccctgctccgttgcgtggttttgtggtggtgattttggtggatgggatatgcctgcgttgcgtgcag

Basic information

species Oryza sativa
transcript LOC_Os02g42520.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|25797193|gb|CA753154.1|CA753154
EST:     TGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAG                         CGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGG
genomic: TGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAGgtacgtacga ... ttgcgtgcagCGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGG
EST: gi|88357025|gb|CI620913.1|CI620913
EST:     TGCGGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAG                         CGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGG
genomic: TGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAGgtacgtacga ... ttgcgtgcagCGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGG
EST: gi|88372773|gb|CI612701.1|CI612701
EST:     TGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAG                         CGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGG
genomic: TGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAGgtacgtacga ... ttgcgtgcagCGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGG
EST: gi|58602019|gb|CK012547.1|CK012547
EST:     TGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAG                         CGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGG
genomic: TGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAGgtacgtacga ... ttgcgtgcagCGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGG
EST: gi|32948087|gb|BP184659.1|BP184659
EST:     TGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAG                         CGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGG
genomic: TGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAGgtacgtacga ... ttgcgtgcagCGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGG
EST: gi|88425441|gb|CI567161.1|CI567161
EST:     TGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAG                         CGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGG
genomic: TGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAGgtacgtacga ... ttgcgtgcagCGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGG
EST: gi|58658973|gb|CK047653.1|CK047653
EST:     TGGCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAG                         CGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGG
genomic: TGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAGgtacgtacga ... ttgcgtgcagCGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGG
EST: gi|29617893|gb|CB622905.1|CB622905
EST:     TGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAG                         CGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGG
genomic: TGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAGgtacgtacga ... ttgcgtgcagCGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGG