Sequence
atgc intronic sequence ATGC exonic sequenceTACACTGTCTGGCTTTAGGTCTGGGAAATTCATGACATTAGTTGCCACAAATGTGGCAGCTCGAGGTCTTGATATTAATGATGTTCAGTTAATTATACAGgtacttttgatgattgtaaatacaatgtatcagatcattttttttttcgtcactaccttgtatgcctgatatttgtattttgatttag
Basic information
species | Glycine max |
transcript | GLYMA20G29060.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G29060.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G164956_T02 (Zea mays), 5'ss of exon 8
TACACTGTCTGGCTTTAGGTCTGGGAAATTCATGACATTAGTTGCCACAAATGTGGCAGCTCGAGGTCTTGATATTAATGATGTTCAGTTAATTATACAGgt---acttttgatgattgtaaatacaatgtatcagatcattttttttttcgtcactaccttgtatgcctgatatttgtattttgatttag
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CATTCTTGCTGGATTTCGTAGCGGGAAGTTCCAGGTTTTGGTTGCTACAAATGTGGCGGCTCGTGGTCTGGATATTAATGATGTGCAGCTTATCATTCAGgtatgacctgttttgcagttgagtaatttctaataggtaggttaagttcttatgtttgcattaaa-accttccag----------------
upper sequence: GLYMA20G29060.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G62190.1 (Arabidopsis thaliana), 5'ss of exon 8
TACACTGTCTGGCTTTAGGTCTGGGAAATTCATGACATTAGTTGCCACAAATGTGGCAGCTCGAGGTCTTGATATTAATGATGTTCAGTTAATTATACAGgtacttttgatgattgtaaatacaatgtatcagatcattttttttttcgtcactaccttg-tatgcctgatatttgtattttgatttag
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TACTCTTGCTGGATTTAGGAATGGCAAGTTTGCAACATTGGTGGCTACAAATGTTGCTGCTCGTGGTCTAGATATCAATGATGTGCAGTTAATTATCCAGgt-tagttactgcccatgagctttattcatct--ttggttaatgcctcgttggtgttctaacatcacatcttgtttaaatgtgttacag
upper sequence: GLYMA20G29060.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv16s0022g02110.t01 (Vitis vinifera), 5'ss of exon 8
TACACTGTCTGGCTTTAGGTCTGGGAAATTCATGACATTAGTTGCCACAAATGTGGCAGCTCGAGGTCTTGATATTAATGATGTTCAGTTAATTATACAGgt---acttttgatgattgtaaatacaatgtatcagatcattttttttttcgt----cactaccttgtatgcctgatatttgtattttgatttag-------
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CACGCTTTCTGGATTTAGGTCTGGCAAATTCATGACATTAGTGGCCACAAATGTAGCGGCAAGAGGATTGGACATTAATGATGTGCAGTTAATCATCCAGgtttggcatccaattaatattgacaagctgctgttggtcactcctgtggcaaaagaatgctacttt-tacaccatatatac-cgtcttcattaatcccagtaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254314573|gb|GR829566.1|GR829566EST: ATGTGGCAGCTCGAGGTCTTGATATTAATGATGTTCAGTTAATTATACAG TGTGAACCCCCACGGGATGTAGAAGCCTATATCCATCGTTCTGGACGCACA
genomic: ATGTGGCAGCTCGAGGTCTTGATATTAATGATGTTCAGTTAATTATACAGgtacttttga ... tttgatttagTGTGAACCCCCACGGGATGTAGAAGCCTATATCCATCGTTCTGGACGCACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TACACTGTCTGGCTTTAGGTCTGGGAAATTCATGACATTAGTTGCCACAAATGTGGCAGCTCGAGGTCTTGATATTAATGATGTTCAGTTAATTATACAGgtacttttgatgattgtaaatacaatgtatcagatcattttttttttcgtcactaccttgtatgcctgatatttgtattttgatttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC