1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GAAGAAACTCACTGATCAGTCATTAAAGCTTTTCGAATTTTTACCTAAAGCAATGCAAGAACAATTAATGCTTGAAAGAGATCCGCATGGAAATGTTCAGgtgcttaatgtattatagtgctatactttatcttgccctgtaatgcaatttgactaagcctcaatgttggtatatatttccatttag
species | Glycine max |
transcript | GLYMA17G01360.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAATGCAAGAACAATTAATGCTTGAAAGAGATCCGCATGGAAATGTTCAC GTTGCCAAGATAGAAACEST: gi|208279339|gb|GE080826.1|GE080826
genomic: CAATGCAAGAACAATTAATGCTTGAAAGAGATCCGCATGGAAATGTTCAGgtgcttaatg ... ttccatttagGTTGCCAAGATAGAAAC
EST: CAATTCAAGAACAATTAATGCTTGAAAGAGATCCGCATGGAAATGTTCAG GTTGCCAAGATAGAAACAGAGAAAATGCTTATTCAAATGGTTGAAACTGAGEST: gi|19348946|gb|BM893478.1|BM893478
genomic: CAATGCAAGAACAATTAATGCTTGAAAGAGATCCGCATGGAAATGTTCAGgtgcttaatg ... ttccatttagGTTGCCAAGATAGAAACAGAGAAAATGCTTATTCAAATGGTTGAAACTGAG
EST: CAATGCAAGAACAATTAATGCTTGAAAGAGATCCGCATGGAAATGTTCAG GTTGCCAAGATAGAAACAGAGAAAATGCTTATTCAAATGGTTGAAACTGAGEST: gi|208311116|gb|GE108520.1|GE108520
genomic: CAATGCAAGAACAATTAATGCTTGAAAGAGATCCGCATGGAAATGTTCAGgtgcttaatg ... ttccatttagGTTGCCAAGATAGAAACAGAGAAAATGCTTATTCAAATGGTTGAAACTGAG
EST: CAATGCAAGAACAATTAATGCTTGAAAGAGATCCGCATGGAAATGTTCAG GTTGCCAAGATAGAAACAGAGAAAATGCTTATTCAAATGGTTGAAACTGAGEST: gi|5342423|gb|AI794707.1|AI794707
genomic: CAATGCAAGAACAATTAATGCTTGAAAGAGATCCGCATGGAAATGTTCAGgtgcttaatg ... ttccatttagGTTGCCAAGATAGAAACAGAGAAAATGCTTATTCAAATGGTTGAAACTGAG
EST: GAACAATTAATGCTTGAAAGAGATCCGCATGGAAATGTTCAG GTTGCCAAGATAGAAACAGAGAAAATGCTTATTCAAATGGTTGAAACTGAGEST: gi|207710299|gb|GD689765.1|GD689765
genomic: GAACAATTAATGCTTGAAAGAGATCCGCATGGAAATGTTCAGgtgcttaatg ... ttccatttagGTTGCCAAGATAGAAACAGAGAAAATGCTTATTCAAATGGTTGAAACTGAG
EST: AACAATTAATGCTTGAAAGAGATCCGCATGGAAATGTTCAG GTTGCCAAGATAGAAACAGAGAAAATGCTTATTCAAATGGTTGAAACTGAG
genomic: AACAATTAATGCTTGAAAGAGATCCGCATGGAAATGTTCAGgtgcttaatg ... ttccatttagGTTGCCAAGATAGAAACAGAGAAAATGCTTATTCAAATGGTTGAAACTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGAAACTCACTGATCAGTCATTAAAGCTTTTCGAATTTTTACCTAAAGCAATGCAAGAACAATTAATGCTTGAAAGAGATCCGCATGGAAATGTTCAGgtgcttaatgtattatagtgctatactttatcttgccctgtaatgcaatttgactaagcctcaatgttggtatatatttccatttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA