Sequence
atgc intronic sequence ATGC exonic sequenceTGGGACAACAATGGATCCCACTTTGACACGTGCTGATAGGTTGGTAGGTCAAGTTTTGGGAGAGGTTGGATCACTACCTGAGGTTTTTGTTGAACTTGAGgtaggtggctatgcctaattatccatttatgcctcctgccatgaatgaggataatgatccttataaaatatcttcattcatctcttttgcttgccaatct...
Basic information
species | Glycine max |
transcript | GLYMA15G40750.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G40750.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os12g41400.1 (Oryza sativa), 5'ss of exon 8
TGGGACAACAATGGATCCCACTTTGACACGTGCTGATAGGTTGGTAGGTCAAGTTTTGGGAGAGGTTGGATCACTACCTGAGGTTTTTGTTGAACTTGAGgtaggtggctatgcctaattatccatttatgcctcctgccatgaatgaggataatgatccttataaaatatcttcattcatctcttttgcttgccaatct
|| ||||| |||||||| || ||||||||||||||||| |||| ||||| ||| | || || ||||||||||| ||||| || | ||| || |||||||| || || | | | || || || | | | |||| |||| | | || || | || | ||| |||
GGGAACAACCATGGATCCAACCTTGACACGTGCTGATAGACTGGTTGGTCAGGTTCTAGGTGAAGTTGGATCACTTCCTGATGTCTATGTGGAGCTTGAGgtttgt---------caactcttcgtt---gcatcaagattt-agtgagaataa-aacattcattgcttaaatctg---gactttcatgcatgcag----
upper sequence: GLYMA15G40750.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os12g07740.1 (Oryza sativa), 5'ss of exon 8
TGGGACAACAATGGATCCCACTTTGACACGTGCTGATAGGTTGGTAGGTCAAGTTTTGGGAGAGGTTGGATCACTACCTGAGGTTTTTGTTGAACTTGAGgtaggtggctatgcctaattatccatttatgcctcctgccatgaatgaggataatgatccttataaaatatcttcattcatctcttttgcttgccaatct
||| ||||| |||||||| |||||||||||||| ||||| |||| || || ||| |||| || |||||||| || ||||| || | ||| || |||||||| | || || || ||| || | | | |||| || | || | || | |||| ||
TGGAACAACCATGGATCCAACTTTGACACGTGCCGATAGACTGGTTGGGCAGGTTCTGGGTGAAGTTGGATCCCTTCCTGATGTCTATGTGGAGCTTGAGgt---ttgccataactcatttgtttcttcagggtttta--gtgaacgaatgtcattacttacatctgaacctttcacacag-------------------
upper sequence: GLYMA15G40750.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv13s0074g00310.t01 (Vitis vinifera), 5'ss of exon 8
TGGGACAACAATGGATCCCACTTTGACACGTGCTGATAGGTTGGTAGGTCAAGTTTTGGGAGAGGTTGGATCACTACCTGAGGTTTTTGTTGAACTTGAGgtaggtggctatgcctaattatccattta-------tgcctcctgccatgaatgaggataatgatccttataaaat--atcttcattcatctcttttgcttgccaatct
||| ||||| ||||| |||||||| |||||||||||| | |||| || |||||| | || |||||||| ||||| ||||| |||||||||||||| |||||| ||| ||| | | ||| | || | | || | ||||||| |||||| || || ||| ||| | | | |
TGGTACAACCATGGACCCCACTTTAACACGTGCTGATCGACTGGTGGGGCAAGTTCTTGGGGAGGTTGGGTCACTCCCTGATGTTTTTGTTGAACTAGAGgtaaccaactaaacctgaaagactgattaaactccgtatctattcctatacgcgcagataatgtcgtacataaaagcaattttgtttcttctatatagtt---------
upper sequence: GLYMA15G40750.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv10s0042g01220.t01 (Vitis vinifera), 5'ss of exon 7
TGGGACAACAATGGATCCCACTTTGACACGTGCTGATAGGTTGGTAGGTCAAGTTTTGGGAGAGGTTGGATCACTACCTGAGGTTTTTGTTGAACTTGAGgtaggtggctatgccta--------attatccatttatgcctcctgccatgaatgaggataatgatccttataaaatatcttcattcatctcttttgcttgccaatct
||| ||||| ||||| |||||||| ||||| |||||| | |||| || |||||| | |||||||||||||| || ||||| |||||||||||||| |||||| ||| ||| |||| | | ||| |||| || ||||| | | || ||| || | | |||| | ||
TGGCACAACCATGGACCCCACTTTAACACGAGCTGATCGCCTGGTGGGGCAAGTTCTTGGAGAGGTTGGATCCCTCCCTGATGTTTTTGTTGAACTAGAGgtaaccaactaaacctgcaggactgattaaacttgtattattcctat-atatgcccagataacattacacatcaaagcaattg--ttgtttcttctatttagt-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192330727|gb|FK022004.1|FK022004EST: AAGTTTTGGGAGAGGTTGGATCACTACCTGAGGTTTTTGTTGAACTTGAG GTAAACTTTTTCCTGCTTCGGCGGCTCCTTGGTGTCCGAACAAAAGGGTCT
genomic: AAGTTTTGGGAGAGGTTGGATCACTACCTGAGGTTTTTGTTGAACTTGAGgtaggtggct ... ggtcttgcagGTAAACTTTTTCCTGCTTCGGCGGCTCCTTGGTGTCCGAACAAAAGGGTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGGACAACAATGGATCCCACTTTGACACGTGCTGATAGGTTGGTAGGTCAAGTTTTGGGAGAGGTTGGATCACTACCTGAGGTTTTTGTTGAACTTGAGgtaggtggctatgcctaattatccatttatgcctcctgccatgaatgaggataatgatccttataaaatatcttcattcatctcttttgcttgccaatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG