1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTATATTACAAGAGATGAATTGGAGATTGCTATGACTCAAAATGGAATGGGTGATGAAGCAACAATAAAGGAAATAATCTCTGAGGTGGATGCAGATAATgtaagttggttctagtttgtttaatcagggtacaaaatgtttatgctgtactaataattcttaaactaacag
species | Glycine max |
transcript | GLYMA17G01730.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTGATGAAGCAACAATAAAGGAAATAATCTCTGAGGTGGATGCAGATAAT GATGGGAGAATAAACTATGAGGAATTCTGTGCAATGATGAGAAGTGGAATGEST: gi|192302488|gb|FG994810.1|FG994810
genomic: GTGATGAAGCAACAATAAAGGAAATAATCTCTGAGGTGGATGCAGATAATgtaagttggt ... aaactaacagGATGGGAGAATAAACTATGAGGAATTCTGTGCAATGATGAGAAGTGGAATG
EST: GTGATGAAGCAACAATAAAGGAAATAATCTCTGAGGTGGATGCAGATAAT GATGGGAGAATAAACTATGAGGAATTCTGTGCAATGATGAGAAGTGGAATGEST: gi|209725895|gb|BW654732.1|BW654732
genomic: GTGATGAAGCAACAATAAAGGAAATAATCTCTGAGGTGGATGCAGATAATgtaagttggt ... aaactaacagGATGGGAGAATAAACTATGAGGAATTCTGTGCAATGATGAGAAGTGGAATG
EST: GTGATGAAGCAACAATAAAGGAAATAATCTCTGAGGTGGATGCAGATAAT GATGGGAGAATAAGCTATGAGGAATTCTGTGCAATGATGAGAGGTGGAATGEST: gi|7685078|gb|AW755726.1|AW755726
genomic: GTGATGAAGCAACAATAAAGGAAATAATCTCTGAGGTGGATGCAGATAATgtaagttggt ... aaactaacagGATGGGAGAATAAACTATGAGGAATTCTGTGCAATGATGAGAAGTGGAATG
EST: GTGATGAAGCAACAATAAAGGAAATAATCTCTGAGGTGGATGCAGATAAT GATGGGAGAATAAACTATGAGGAATTCTGTGCAATGATGAGAAGTGGAATGEST: gi|9565244|gb|BE474753.1|BE474753
genomic: GTGATGAAGCAACAATAAAGGAAATAATCTCTGAGGTGGATGCAGATAATgtaagttggt ... aaactaacagGATGGGAGAATAAACTATGAGGAATTCTGTGCAATGATGAGAAGTGGAATG
EST: GTGATGAAGCAACAATAAAGGAAATAATCTCTGAGGTGGATGCAGATAAT GATGGGAGAATAAACTATGAGGAATTCTGTGCAATGATGAGAAGTGGAATGEST: gi|298191902|gb|HO035984.1|HO035984
genomic: GTGATGAAGCAACAATAAAGGAAATAATCTCTGAGGTGGATGCAGATAATgtaagttggt ... aaactaacagGATGGGAGAATAAACTATGAGGAATTCTGTGCAATGATGAGAAGTGGAATG
EST: GTGATGAAGCAACAATAAAGGAAATAATCTCCGAGGTGGATGCAGATAAT GATGGGAGAATATACTATGAGGAATTCTGTGCAATGATGAGAAGTGGAATGEST: gi|58024939|gb|CX711680.1|CX711680
genomic: GTGATGAAGCAACAATAAAGGAAATAATCTCTGAGGTGGATGCAGATAATgtaagttggt ... aaactaacagGATGGGAGAATAAACTATGAGGAATTCTGTGCAATGATGAGAAGTGGAATG
EST: GTGATGAAGCAACAATAAAGGAAATAATCTCTGAGGTGGATGCAGATAAT GATGGGAGAATAAACTATGAGGAATTCTGTGCAATGATGAGAAGTGGAATGEST: gi|192302489|gb|FG994811.1|FG994811
genomic: GTGATGAAGCAACAATAAAGGAAATAATCTCTGAGGTGGATGCAGATAATgtaagttggt ... aaactaacagGATGGGAGAATAAACTATGAGGAATTCTGTGCAATGATGAGAAGTGGAATG
EST: GTGATGAAGCAACAATAAAGGAAATAATCTCTGAGGTGGATGCAGATAAT GATGGGAGAATAAACTATGAGGAATTCTGTGCAATGATGAGAAGTGGAATGEST: gi|193578771|gb|FK535317.1|FK535317
genomic: GTGATGAAGCAACAATAAAGGAAATAATCTCTGAGGTGGATGCAGATAATgtaagttggt ... aaactaacagGATGGGAGAATAAACTATGAGGAATTCTGTGCAATGATGAGAAGTGGAATG
EST: GTGATGAAGCAACAATAAAGGAAATAATCTCTGAGGTGGATGCAGATAAT GATGGGAGAATAAACTATGAGGAATTCTGTGCAATGATGAGAAGTGGAATG
genomic: GTGATGAAGCAACAATAAAGGAAATAATCTCTGAGGTGGATGCAGATAATgtaagttggt ... aaactaacagGATGGGAGAATAAACTATGAGGAATTCTGTGCAATGATGAGAAGTGGAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATATTACAAGAGATGAATTGGAGATTGCTATGACTCAAAATGGAATGGGTGATGAAGCAACAATAAAGGAAATAATCTCTGAGGTGGATGCAGATAATgtaagttggttctagtttgtttaatcagggtacaaaatgtttatgctgtactaataattcttaaactaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT