1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCCTGATGCAAATACTAGCCTCATTCCTAGTGTGAGTTTAACTATGGGAGGTGGAAGCCATTTTGCTGTTTATGATCCAATAATTATTATCTCAACTCAGgtggtagctccagctggatttctcttcaatatatgtatccaacaattgtgttagccttgagagtacacgtataactgataacatgttccttcccttatcattttacag
species | Glycine max |
transcript | GLYMA16G23120.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTGGAAGCCATTTTGCTGTTTATGATCCAATAATTATTATCTCAACTCAG AGCGAACTTGTATATCGTCTAGCAGTCGTCAAAACTGCTGAGCTAAACATAEST: gi|31309522|gb|CD394725.1|CD394725
genomic: GTGGAAGCCATTTTGCTGTTTATGATCCAATAATTATTATCTCAACTCAGgtggtagctc ... cattttacagAGCGAACTTGTATATTGTCTAGCAGTCGTCAAAACTGCTGAGCTAAACATA
EST: GTGGAAGCCATTTTGCTGTTTATGATCCAATAATTATTATCTCAACTCAG AGCGAACTTGTATATTGTCTAGCAGTCGTCAAAAACTGCTGAGCTAAACAT
genomic: GTGGAAGCCATTTTGCTGTTTATGATCCAATAATTATTATCTCAACTCAGgtggtagctc ... cattttacagAGCGAACTTGTATATTGTCTAGCAGTCGTC-AAAACTGCTGAGCTAAACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTGATGCAAATACTAGCCTCATTCCTAGTGTGAGTTTAACTATGGGAGGTGGAAGCCATTTTGCTGTTTATGATCCAATAATTATTATCTCAACTCAGgtggtagctccagctggatttctcttcaatatatgtatccaacaattgtgttagccttgagagtacacgtataactgataacatgttccttcccttatcattttacag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT