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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTATCTTGAATTCATTTCGGCTACAATGCATAGGCACAGACTTGAACGTGATGAACATCTTTACAAAGCATTCCAGTATTTTGATAAGGATAACAGTGGgtgagttttacaagactggtattttagtgttttttctaatcatttgtgtttggacaacgagataatgttttctgtttaaagtcacacactcatctttata...

Basic information

species Glycine max
transcript GLYMA17G01730.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193402470|gb|FK369802.1|FK369802
EST:     ATGAACATCTTTACAAAGCATTCCAGTATTTTTGATAAGGATAACAGTGG                         GTATATTACAAGAGATGAATTGGAGATTGCTATGACTCAAAATGGAATGGG
genomic: ATGAACATCTTTACAAAGCATTCCAGTATTTT-GATAAGGATAACAGTGGgtgagtttta ... tgatggacagGTATATTACAAGAGATGAATTGGAGATTGCTATGACTCAAAATGGAATGGG
EST: gi|51338304|gb|CO982170.1|CO982170
EST:     GATGAACATCTTTACAAAGCATTCCAGTATTTTGATAAGGATAACAGTGG                         GTATATTACAAGAGATGAATTGGAGATTGCTATGACTCAAAATGGAATGGG
genomic: GATGAACATCTTTACAAAGCATTCCAGTATTTTGATAAGGATAACAGTGGgtgagtttta ... tgatggacagGTATATTACAAGAGATGAATTGGAGATTGCTATGACTCAAAATGGAATGGG
EST: gi|192302488|gb|FG994810.1|FG994810
EST:     GATGAACATCTTTACAAAGCATTCCAGTATTTTGATAAGGATAACAGTGG                         GTATATTACAAGAGATGAATTGGAGATTGCTATGACTCAAAATGGAATGGG
genomic: GATGAACATCTTTACAAAGCATTCCAGTATTTTGATAAGGATAACAGTGGgtgagtttta ... tgatggacagGTATATTACAAGAGATGAATTGGAGATTGCTATGACTCAAAATGGAATGGG
EST: gi|209725895|gb|BW654732.1|BW654732
EST:     TTGATAAGGATAACAGTGG                         GTATATTACAAGAGATGAATTGGAGATTGTTATGACTCAAAATGGAATGGG
genomic: TTGATAAGGATAACAGTGGgtgagtttta ... tgatggacagGTATATTACAAGAGATGAATTGGAGATTGCTATGACTCAAAATGGAATGGG
EST: gi|7685078|gb|AW755726.1|AW755726
EST:     GATGAACATCTTTACAAAGCATTCCAGTATTTTGATAAGGATAACAGTGG                         GTATATTACAAGAGATGAATTGGAGATTGCTATGACTCAAAATGGAATGGG
genomic: GATGAACATCTTTACAAAGCATTCCAGTATTTTGATAAGGATAACAGTGGgtgagtttta ... tgatggacagGTATATTACAAGAGATGAATTGGAGATTGCTATGACTCAAAATGGAATGGG
EST: gi|9565244|gb|BE474753.1|BE474753
EST:     GATGAACATCTTTACAAAGCATTCCAGTATTTTGATAAGGATAACAGTGG                         GTATATTACAAGAGATGAATTGGAGATTGCTATGACTCAAAATGGAATGGG
genomic: GATGAACATCTTTACAAAGCATTCCAGTATTTTGATAAGGATAACAGTGGgtgagtttta ... tgatggacagGTATATTACAAGAGATGAATTGGAGATTGCTATGACTCAAAATGGAATGGG
EST: gi|298191902|gb|HO035984.1|HO035984
EST:     GATGAACATCTTTACAAAGCATTCCAGTATTTTGATAAGGATAACAGTGG                         GTATATTACAAGAGATGAATTGGAGATTGCTATGACTCAAAATGGAATGGG
genomic: GATGAACATCTTTACAAAGCATTCCAGTATTTTGATAAGGATAACAGTGGgtgagtttta ... tgatggacagGTATATTACAAGAGATGAATTGGAGATTGCTATGACTCAAAATGGAATGGG
EST: gi|58024939|gb|CX711680.1|CX711680
EST:     GATGAACATCTTTACAAAGCATTCCAGTATTTTGATAAGGATAACAGTGG                         GTATATTACAAGAGATGAATTGGAGATTGCTATGACTCAAAATGGAATGGG
genomic: GATGAACATCTTTACAAAGCATTCCAGTATTTTGATAAGGATAACAGTGGgtgagtttta ... tgatggacagGTATATTACAAGAGATGAATTGGAGATTGCTATGACTCAAAATGGAATGGG
EST: gi|192302489|gb|FG994811.1|FG994811
EST:     GATGAACATCTTTACAAAGCATTCCAGTATTTTGATAAGGATAACAGTGG                         GTATATTACAAGAGATGAATTGGAGATTGCTATGACTCAAAATGGAATGGG
genomic: GATGAACATCTTTACAAAGCATTCCAGTATTTTGATAAGGATAACAGTGGgtgagtttta ... tgatggacagGTATATTACAAGAGATGAATTGGAGATTGCTATGACTCAAAATGGAATGGG
EST: gi|193578771|gb|FK535317.1|FK535317
EST:     GGATAACAGTGG                         GTATATTACAAGAGATGAATTGGAGATTGCTATGACTCAAAATGGAATGGG
genomic: GGATAACAGTGGgtgagtttta ... tgatggacagGTATATTACAAGAGATGAATTGGAGATTGCTATGACTCAAAATGGAATGGG