1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATTGCTCTGGAAAGGAAATTGGTTCATACAAGAGAAAAGTTGTAAGATCCTCGCTTTAATTGTTAGgtaatacaaacacaagaattttcacattttaatacaaaaaaaattctcggatttgaatcaaataacagatctgttgtatacttgtacaagttaaccttcccagttattgcaaaatttcaccgtttactgattatag
species | Glycine max |
transcript | GLYMA16G25740.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AATTGGTTCATACAAGAGAAAAGTTGTAAGATCCTCGCTTTAATTGTTAG TGTCAGGCCAAAAAATCAGAATGGCATTGTGTCAAATGGAGAAGCATCAAAEST: gi|17518712|gb|BM187754.1|BM187754
genomic: AATTGGTTCATACAAGAGAAAAGTTGTAAGATCCTCGCTTTAATTGTTAGgtaatacaaa ... ctgattatagTGTCAGGCCAAAAAATCAGAATGGCATTGTGTCAAATGGAGAAGCATCAAA
EST: TGTAAGATCCTCGCTTTAATTGTTAG TGTCAGGCCAAAAAATCAGAATGGCATTGTGTCAAATGGAGAAGCATCAAAEST: gi|193728323|gb|FK665093.1|FK665093
genomic: TGTAAGATCCTCGCTTTAATTGTTAGgtaatacaaa ... ctgattatagTGTCAGGCCAAAAAATCAGAATGGCATTGTGTCAAATGGAGAAGCATCAAA
EST: AATTGGTTCATACAAGAGAAAAGTTGTAAGATCCTCGCTTTAATTGTTAG TGTCAGGCCAAAAAATCAGAATGGCATTGTGTCAAATGGAGAAGCATCAAA
genomic: AATTGGTTCATACAAGAGAAAAGTTGTAAGATCCTCGCTTTAATTGTTAGgtaatacaaa ... ctgattatagTGTCAGGCCAAAAAATCAGAATGGCATTGTGTCAAATGGAGAAGCATCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGCTCTGGAAAGGAAATTGGTTCATACAAGAGAAAAGTTGTAAGATCCTCGCTTTAATTGTTAGgtaatacaaacacaagaattttcacattttaatacaaaaaaaattctcggatttgaatcaaataacagatctgttgtatacttgtacaagttaaccttcccagttattgcaaaatttcaccgtttactgattatag
- - - - - - - - - - - - - - AAGAGA