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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGCACTTCAAATGGCAGTTGAAGCAAGGAATCCATATTTTAGGTTGGGTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtactcattactgatcaactcgagatcactgcaatgcactattcttcatgttgattattggcttgtttgaattagtgttctagcagtattcaaattgacattttgtgattttgacaaacccag

Basic information

species Glycine max
transcript GLYMA18G10430.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G10430.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G26850.1 (Arabidopsis thaliana), 5'ss of exon 5
GCTTGCACTTCAAATGGCAGTTGAAGCAAGGAATCCATATTTTAGGTTGGGTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtactcattactgatcaactcgagatcactgcaatgcactattcttcatgttgattattggct-tgtttgaattagtgttctagcagtattcaaattgacattttgtgattttgacaaacccag
||||||| |||| ||||| | ||| ||    |||||||| || ||  | |||||||||||||||||||| ||||| || || || ||||||||||||||||||   ||     |   |  | ||   |   |  | |||  ||  |||| |    | || | | || |||  || ||| |  |    | ||  ||                             
GCTTGCAGTTCACATGGCTGCTGAGGCTGCTAATCCATACTTCAGACTCGGTTACAACAGCTTGGGTGCTTTTGCCACTATCAATCATCTCCACTTTCAGgtat--atccaaaagtgatccaagcataac-cttttcacccttgctcatctaagatgtttgttctgattgttttggtggtg-attgtttttggaaacag-------------------------

upper sequence: GLYMA18G10430.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv19s0090g01000.t01 (Vitis vinifera), 5'ss of exon 5
GCTTGCACTTCAAATGGCAGTTGAAGCAAGGAATCCATATTTTAGGTTGGGTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtactcattactgatcaactcgagatcactgcaatgcactattct-tcatgttgatt--attggcttgtttgaattagtgttctagcagtattcaaattgacattttgtgattttgacaaacccag
|||||| ||| | ||||| || |||||| | |||||||||||  ||||||||||||||||||||||||||||||| ||||| ||||| || |||||||||||  || || |   ||| ||    |   ||||||| || | | || | |  |||  |  ||||| ||  |  |||  |  ||| |  |   ||||   | |||                       
GCTTGCCCTTGACATGGCTGTGGAAGCAGGAAATCCATATTTCCGGTTGGGTTACAACAGCTTGGGTGCATTTGCTACCATCAACCACCTTCACTTTCAGgt-ttctttccacctcacctttgaa---ctgcaat-cattgtactataaaattggctccattgg-ttaatgaaatatgaattcca-taactttcatggtaacag----------------------

upper sequence: GLYMA18G10430.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S9_179V6.1 (Physcomitrella patens), 5'ss of exon 5
GCTTGCACTTCAAATGGCAGTTGAAGCAAGGAATCCATATTTTAGGTTGGGTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtactcattactgatcaactcgagatcactgcaatgcactattcttcatgttga--ttattggcttgtttgaattagtgttctagcagtattcaaattgacattttgtgattttgacaaacccag
 || ||  | || ||||| | ||| ||||  ||||| |||||  |  | |||||||||||||||||||||||||| || || |||||  | || || ||||||   | |||    | |      |    |  | |   || |   | | | | |   || |  | |||   |||| | |||| |  || | ||||  || | ||  | |                
ACTGGCTTTGCACATGGCTGCTGAGGCAAACAATCCGTATTTCCGCCTAGGTTACAACAGCTTGGGTGCATTTGCCACAATCAACCACTTGCATTTCCAGgtag--agtacatgcccatgtagca--ggttaagtctgctgtctctgacgctcaagctaattacgtgtagcaatt-gcgttcaa--agaagtcaa--tgccgttgagag----------------

upper sequence: GLYMA18G10430.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ19729 (Selaginella moellendorffii), 5'ss of exon 5
GCTTGCACTTCAAATGGCAGTTGAAGCAAGGAATCCATATTTTAGGTTGGGTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtactc--attactgatcaactcgagatcactgcaatgcactattcttcatgttgattattggcttgtttgaattagtgttctagcagtattcaaattgacattttgtgattttgacaaacccag
  | || |||||||||||     ||||||  |||  ||| || ||  | || |  || || ||||| |||||||| || |||||||||||||| |||||||||     |  | | ||    |     | | |||  |   ||| | ||  |  |||| || |                                                               
TATAGCTCTTCAAATGGCTAAACAAGCAAATAATATATACTTCAGACTTGGATTTAATAGTTTGGGAGCATTTGCTACAATTAACCATCTCCATTTTCAGgtatgtgaaagaataatatttttatatttattgctgtaagctaatttt--ttctgataatag---------------------------------------------------------------

upper sequence: GLYMA18G10430.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ22189 (Selaginella moellendorffii), 5'ss of exon 5
GCTTGCACTTCAAATGGCAGTTGAAGCAAGGAATCCATATTTTAGGTTGGGTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtactcattactgatcaactcgagatcactgcaatgcactattcttcatgttgattattggcttgtttgaattagtgttctagcagtattcaaattgacattttgtgattttgacaaacccag
  | ||| || | |||||||  |||||||| | |||||  ||| | ||||| || || || ||||||||||||||||| || || |||||||| ||||||||| | |||| |    |  |    || | || |      | | ||| || || ||                                                                    
TTTGGCAATTTATATGGCAGCAGAAGCAAGCAGTCCATTCTTTCGCTTGGGCTATAATAGTTTGGGTGCATTTGCAACAATAAATCATCTCCATTTTCAGgtaat-attatta--tatttt---ataattgtatatttatttactttatttttatag------------------------------------------------------------------

upper sequence: GLYMA18G10430.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ25760 (Selaginella moellendorffii), 5'ss of exon 5
GCTTGCACTTCAAATGGCAGTTGAAGCAAGGAATCCATATTTTAGGTTGGGTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtactcattactgatcaactcgagatcactgcaatgcactattcttcatgttgattattggcttgtttgaattagtgttctagcagtattcaaattgacattttgtgattttgacaaacccag
  | ||| || | |||||||  |||||||| | |||||  ||| | ||||| || || || ||||||||||||||||| || || |||||||| ||||||||| | |||| |          |  | |     ||  | | |  || ||                                                                          
TTTGGCAATTTATATGGCAGCAGAAGCAAGCAGTCCATTCTTTCGCTTGGGCTATAATAGTTTGGGTGCATTTGCAACAATAAATCATCTCCATTTTCAGgtaat-attattatattttataattttatatttatctattttattttatag------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8283980|gb|BE021539.1|BE021539
EST:     GTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAG                         GCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
genomic: GTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtactcatta ... acaaacccagGCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
EST: gi|120495927|gb|EH224094.1|EH224094
EST:     GTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAG                         GCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
genomic: GTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtactcatta ... acaaacccagGCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
EST: gi|192311633|gb|FK003550.1|FK003550
EST:     TGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAG                         GCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
genomic: TGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtactcatta ... acaaacccagGCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
EST: gi|192315959|gb|FK007092.1|FK007092
EST:     GGGTGCATTTGCAACCATTAACCATCTCCACTTTCAG                         GCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
genomic: GGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtactcatta ... acaaacccagGCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
EST: gi|207795207|gb|GD767758.1|GD767758
EST:     GTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAG                         GCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
genomic: GTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtactcatta ... acaaacccagGCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
EST: gi|192311632|gb|FK003549.1|FK003549
EST:     TGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAG                         GCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
genomic: TGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtactcatta ... acaaacccagGCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
EST: gi|21888834|gb|BQ742047.1|BQ742047
EST:     GTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAG                         GCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
genomic: GTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtactcatta ... acaaacccagGCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
EST: gi|192315960|gb|FK007093.1|FK007093
EST:     GGGTGCATTTGCAACCATTAACCATCTCCACTTTCAG                         GCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
genomic: GGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtactcatta ... acaaacccagGCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
EST: gi|27446264|gb|CA953387.1|CA953387
EST:     GTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAC                         GCATATTACTTGGCTCTTCCTTTTCCAATTGAGAACGCCCCTACTAAGAAA
genomic: GTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtactcatta ... acaaacccagGCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA