1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGACAATAGTGGCACTATCACCTATGAAGAATTAAAGACTGGCTTGGCTCGAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCGgtaagtagttagaagtcacggatccctacaagagcataactagttgaacatatgtgcattcattgcatcttaaactcagcaggattgttgttctcacgtatattttttctcag
species | Glycine max |
transcript | GLYMA17G01730.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCG GCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCTEST: gi|51338304|gb|CO982170.1|CO982170
genomic: GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCGgtaagtagtt ... tttttctcagGCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCT
EST: NAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCG GCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCTEST: gi|192302488|gb|FG994810.1|FG994810
genomic: GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCGgtaagtagtt ... tttttctcagGCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCT
EST: GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCG GCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCTEST: gi|7685078|gb|AW755726.1|AW755726
genomic: GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCGgtaagtagtt ... tttttctcagGCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCT
EST: GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCG GCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCTEST: gi|46492915|gb|CN472471.1|CN472471
genomic: GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCGgtaagtagtt ... tttttctcagGCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCT
EST: GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCG GCTGATGTTGACGGANATGGGEST: gi|9565244|gb|BE474753.1|BE474753
genomic: GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCGgtaagtagtt ... tttttctcagGCTGATGTTGACGGAAATGGG
EST: GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCG GCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCTEST: gi|298191902|gb|HO035984.1|HO035984
genomic: GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCGgtaagtagtt ... tttttctcagGCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCT
EST: GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCG GCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCTEST: gi|192302489|gb|FG994811.1|FG994811
genomic: GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCGgtaagtagtt ... tttttctcagGCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCT
EST: GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCG GCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCT
genomic: GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCGgtaagtagtt ... tttttctcagGCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACAATAGTGGCACTATCACCTATGAAGAATTAAAGACTGGCTTGGCTCGAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCGgtaagtagttagaagtcacggatccctacaagagcataactagttgaacatatgtgcattcattgcatcttaaactcagcaggattgttgttctcacgtatattttttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA