1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TAATACAGATCATGTTCCAAGGGTATTGCCTAAGAATGAGGATCCAAGTTTGGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTTTGGGAACTCTCGAGgtatatgatagattacttgctctcctgacaatgtttccgattcccatggataaaaaataaagattacttacttggttttagacatatctctatctatctc...
species | Glycine max |
transcript | GLYMA08G19640.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTTTGGGAACTCTCGAG AAATTCCGAAAGGAAGACATGCAACTCTCAGGAACAGAGGCATATATGCGAEST: gi|208069167|gb|GD869117.1|GD869117
genomic: TGGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTTTGGGAACTCTCGAGgtatatgata ... actgttccagAAATTCCGAAAGGAAGACATGCAACTCTCAGGAACAGAGGCATATATGCGA
EST: TGGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTTTGGGAACTCTCGAG AAATTCCGAAAGGAAGACATGCAACTCTCAGGAACAGAGGCATATATGCGAEST: gi|208113975|gb|GD909780.1|GD909780
genomic: TGGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTTTGGGAACTCTCGAGgtatatgata ... actgttccagAAATTCCGAAAGGAAGACATGCAACTCTCAGGAACAGAGGCATATATGCGA
EST: GGGCCAGCTTTTGGGAACTCTCGAG AAATTCCGAAAGGAAGACATGCAACTCTCAGGAACAGAGGCATATATGCGAEST: gi|208176632|gb|GD979105.1|GD979105
genomic: GGGCCAGCTTTTGGGAACTCTCGAGgtatatgata ... actgttccagAAATTCCGAAAGGAAGACATGCAACTCTCAGGAACAGAGGCATATATGCGA
EST: TGGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTTTGGGAACTCTCGAG AAATTCCGAAAGGAAGACATGCAACTCTCAGGAACAGAGGCATATATGCGAEST: gi|193532237|gb|FK491945.1|FK491945
genomic: TGGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTTTGGGAACTCTCGAGgtatatgata ... actgttccagAAATTCCGAAAGGAAGACATGCAACTCTCAGGAACAGAGGCATATATGCGA
EST: TGGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTTTGGGAACTCTCGAG AAATTCCGAAAGGAAGACATGCAACTCTCAGGAACAGAGGCATATATGCGAEST: gi|208324334|gb|GE125691.1|GE125691
genomic: TGGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTTTGGGAACTCTCGAGgtatatgata ... actgttccagAAATTCCGAAAGGAAGACATGCAACTCTCAGGAACAGAGGCATATATGCGA
EST: TGGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTTTGGGAACTCTCGAG AAATTCCGAAAGGAAGACATGCAACTCTCAGGAACAGAGGCATATATGCGAEST: gi|193413949|gb|FK376543.1|FK376543
genomic: TGGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTTTGGGAACTCTCGAGgtatatgata ... actgttccagAAATTCCGAAAGGAAGACATGCAACTCTCAGGAACAGAGGCATATATGCGA
EST: TGGTTAATAGGAACAAAAGAATATTGGGCCAGCTTTTGGGAACTCTCGAG AAATTCCGAAAGGAAGACATGCAACTCTCAGGAACAGAGGCATATATGCGAEST: gi|207805992|gb|GD778287.1|GD778287
genomic: TGGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTTTGGGAACTCTCGAGgtatatgata ... actgttccagAAATTCCGAAAGGAAGACATGCAACTCTCAGGAACAGAGGCATATATGCGA
EST: GGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTTTGGGAACTCTCGAG AAATTCCGAAAGGAAGACATGCAACTCTCAGGAACAGAGGCATATATGCGAEST: gi|208143447|gb|GD942465.1|GD942465
genomic: GGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTTTGGGAACTCTCGAGgtatatgata ... actgttccagAAATTCCGAAAGGAAGACATGCAACTCTCAGGAACAGAGGCATATATGCGA
EST: TGGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTTTGGGAACTCTCGAG AAATTCCGAAAGGAAGACATG
genomic: TGGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTTTGGGAACTCTCGAGgtatatgata ... actgttccagAAATTCCGAAAGGAAGACATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAATACAGATCATGTTCCAAGGGTATTGCCTAAGAATGAGGATCCAAGTTTGGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTTTGGGAACTCTCGAGgtatatgatagattacttgctctcctgacaatgtttccgattcccatggataaaaaataaagattacttacttggttttagacatatctctatctatctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA