1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AAAGGGAATATTGACCTGAGCCAACTAAAGTTTCGTGTCCTTGACGAAGCCGATGAAATGCTGAGGATGGGTTTTGTTGAAGATGTTGAAATGATTCTAGgtatcttttttttccaatgcatgggcatcgggtgctgctaagtctcaatttttgcatcaattatgttaaactcattgtgaatttgtgatactaatactat...
species | Glycine max |
transcript | GLYMA20G29060.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CGATGAAATGCTGAGGATGGGTTTTGTTGAAGATGTTGAAATGATTCTAG GCAAGGTAGAAAATGTTAATAAAGTTCAGACACTTCTTTTCAGTGCTACTTEST: gi|254316012|gb|GR825821.1|GR825821
genomic: CGATGAAATGCTGAGGATGGGTTTTGTTGAAGATGTTGAAATGATTCTAGgtatcttttt ... tattttgcagGCAAGGTAGAAAATGTTAATAAAGTTCAGACACTTCTTTTCAGTGCTACTT
EST: CGATGAAATGCTGAGGATGGGTTTTGTTGAAGATGTTGAAATGATTCTAG GCAAGGTAGAAAATGTTAATAAAGTTCAGACACTTCTTTTCAGTGCTACTTEST: gi|254314573|gb|GR829566.1|GR829566
genomic: CGATGAAATGCTGAGGATGGGTTTTGTTGAAGATGTTGAAATGATTCTAGgtatcttttt ... tattttgcagGCAAGGTAGAAAATGTTAATAAAGTTCAGACACTTCTTTTCAGTGCTACTT
EST: GAAATGCTGAGGATGGGTTTTGTTGAAGATGTTGAAATGATTCTAG GCAAGGTAGAAAATGTTAATAAAGTTCAGACACTTCTTTTCAGTGCTACTTEST: gi|207803896|gb|GD773625.1|GD773625
genomic: GAAATGCTGAGGATGGGTTTTGTTGAAGATGTTGAAATGATTCTAGgtatcttttt ... tattttgcagGCAAGGTAGAAAATGTTAATAAAGTTCAGACACTTCTTTTCAGTGCTACTT
EST: CGATGAAATGCTGAGGATGGGTTTTGTTGAAGATGTTGAAATGATTCTAG GCAAGGTAGAAAATGTTAATAAAGTTCAGACACTTCTTTTCAGTGCTACTTEST: gi|207709886|gb|GD689688.1|GD689688
genomic: CGATGAAATGCTGAGGATGGGTTTTGTTGAAGATGTTGAAATGATTCTAGgtatcttttt ... tattttgcagGCAAGGTAGAAAATGTTAATAAAGTTCAGACACTTCTTTTCAGTGCTACTT
EST: AAATGCTGAGGATGGGTTTTGTTGAAGATGTTGAAATGATTCTAG GCAAGGTAGAAAATGTTAATAAAGTTCAGACACTTCTTTTCAGTGCTACTT
genomic: AAATGCTGAGGATGGGTTTTGTTGAAGATGTTGAAATGATTCTAGgtatcttttt ... tattttgcagGCAAGGTAGAAAATGTTAATAAAGTTCAGACACTTCTTTTCAGTGCTACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGGGAATATTGACCTGAGCCAACTAAAGTTTCGTGTCCTTGACGAAGCCGATGAAATGCTGAGGATGGGTTTTGTTGAAGATGTTGAAATGATTCTAGgtatcttttttttccaatgcatgggcatcgggtgctgctaagtctcaatttttgcatcaattatgttaaactcattgtgaatttgtgatactaatactat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG