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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTCCTGTTTCAGCTTGAGGCTAGCAATGATGGGGAGGTTCAATTCTTTCCAAATGCACCTATTGATGTAGAGAATTCTCCTAGTTTTGTTGCCATCAAtgtaagtttcttttaaaaaagtcctccagtctgtcagtaaaataggtgtttatatgatacttttccttgtacctttttttaaca

Basic information

species Glycine max
transcript GLYMA18G10430.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G10430.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G26850.1 (Arabidopsis thaliana), 5'ss of exon 4
AGGTCCTGTTTCAGCTTGAGGCTAGCAATGATGGGGAGGTTCAATTCTTTCCAAATGCACCTATTGATGTAGAGAATTCTCCTAGTTTTGTTGCCATCAAtgtaa-gtttcttttaaaaaa------gtcctccagtctgtcagtaaaataggt--gtttatatgatactt-ttccttgtacctttttttaaca-
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-GTTGCTCTTCCAGTTTGAAGCTGGTGAAGATGCCCAAGTTCAGTTCTTCCCTTGCATGCCTATTGACCCTGAGAATTCTCCCAGTGTTGTTGCCATCAATgtaaagactcttgtgcagagagcttggttttttctttcttccttttattggtttcgctagcaaaagattaattctttattgttgtttttaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27446264|gb|CA953387.1|CA953387
EST:     CCAAATGCACCTATTGATGTAGAGAATTCTCCTAGTTTTGTTGCCATCAA                         TGTGAGTCCTATTGAATATGGGCATGTGCTGCTGATTCCACGGATTTTTGA
genomic: CCAAATGCACCTATTGATGTAGAGAATTCTCCTAGTTTTGTTGCCATCAAtgtaagtttc ... ttttttaacaGGTGAGTCCTATTGAATATGGGCATGTGCTGCTGATTCCACGGATTTTTGA