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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTCAAAAATTGAATCTCCTGAGGAGTCTTCTGAAGCAGCACAACTCCTGAAAACACTTCTAGAAGGTGTTGAAATGACAGAGAAACAACTTGCAGAGGtacgttgttctactatgtgctatggctgtttagtttctatacagcaatagtcaaagctaatatagtgtcttttctcagtgtcatttatgtggttgtgttt...

Basic information

species Glycine max
transcript GLYMA18G10120.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G10120.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv19s0090g01190.t01 (Vitis vinifera), 5'ss of exon 3
-TTTTCAAAAATTGAATCTCCTGAGGAGTCTTCTGAAGCAGCACAACTCCTGAAAACACTTCTAGAAGGTGTTGAAATGACAGAGAAACAACTTGCAGAGGta----cgttgttctac---tatgtgctatggctgtttagtttctatacagcaatagtcaaagctaatatagtgtcttttctcagtgtcatttatgtggttgtgttt
 |||||||| |||||     || | ||  || ||| ||| |  | |||  | ||||||||||| || |||||||||||||| || ||||| |||| |||||||    | || || | |   | |   ||||   || | ||  |   |||  |  |    |    |    || ||  |   |  ||  |||| ||             
TTTTTCAAAGATTGATGAATCTAAAGATACTGCTGGAGCTGTTCCACTTTTAAAAACACTTCTGGAGGGTGTTGAAATGACTGAAAAACAGCTTGGAGAGgtaaactcattatttttcatttgtcatctataagtgctcagccttattaccacctttacaagtcattgattaatggttaaacagaggttcatatacacac--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8284593|gb|BE022081.1|BE022081
EST:     GAAAACACTTCTAGAAGGTGTTGAAATGACAGAGAAACAACTTGCAGAGG                         TACTCAAAAAGTTTGGTGTGGAAAAATTTGATCCTACAAATGAGCCATTTG
genomic: GAAAACACTTCTAGAAGGTGTTGAAATGACAGAGAAACAACTTGCAGAGGtacgttgttc ... tgcttataggTACTCAAAAAGTTTGGTGTGGAAAAATTTGATCCTACAAATGAGCCATTTG
EST: gi|10236123|gb|BE804941.1|BE804941
EST:     GAAAACACTTCTAGAAGGTGTTGAAATGACAGAGAAACAACTTGCAGAGG                         TACTCAAAAAGTTTGGTGTGGAAAAATTTGATCCTACAAATGAGCCATTTG
genomic: GAAAACACTTCTAGAAGGTGTTGAAATGACAGAGAAACAACTTGCAGAGGtacgttgttc ... tgcttataggTACTCAAAAAGTTTGGTGTGGAAAAATTTGATCCTACAAATGAGCCATTTG
EST: gi|21888782|gb|BQ741995.1|BQ741995
EST:     GAAAACACTTCTAGAAGGTGTTGAAATGACAGAGAAACAACTTGCAGAGG                         TACTCAAAAAGTTTGGTGTGGAAAAATTTGATCCTACAAATGAGCCATTTG
genomic: GAAAACACTTCTAGAAGGTGTTGAAATGACAGAGAAACAACTTGCAGAGGtacgttgttc ... tgcttataggTACTCAAAAAGTTTGGTGTGGAAAAATTTGATCCTACAAATGAGCCATTTG
EST: gi|18725729|gb|BM523638.1|BM523638
EST:     GAAAACACTTCTAGAAGGTGTTGAAATGACAGAGAAACAACTTGCAGAGG                         TACTCAAAAAGTTTGGTGTGGAAAAATTTGATCCTACAAATGAGCCATTTG
genomic: GAAAACACTTCTAGAAGGTGTTGAAATGACAGAGAAACAACTTGCAGAGGtacgttgttc ... tgcttataggTACTCAAAAAGTTTGGTGTGGAAAAATTTGATCCTACAAATGAGCCATTTG