1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGAAGGTGGAGATGCATCTGATAAACCAATCGATAGTGCAGTTCTATCCAGAATGAAACAATTCAGGGCAATGAATAAGCTCAAGAAGCTAGCATTGAAGgtatggcatcaaacttagattaaaagcaactaaagtcaatgtcctttttctggcaggtccttgatattgttgaggaaggttgatttctcttttaattgaa...
species | Glycine max |
transcript | GLYMA17G01730.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAATGAAACAATTCAGGGCAATGAATAAGCTCAAGAAGCTAGCATTGAAG GTTATCGCTGAAAATCTATCAGAAGAGGAGATTAAAGGTCTCAAAGCAATGEST: gi|46492915|gb|CN472471.1|CN472471
genomic: GAATGAAACAATTCAGGGCAATGAATAAGCTCAAGAAGCTAGCATTGAAGgtatggcatc ... atttctctagGTTATCGCTGAAAATCTATCAGAAGAGGAGATTAAAGGTCTCAAAGCAATG
EST: GAATGAAACAATTCAGGGCAATGAATAAGCTCAAGAAGCTAGCATTGAAG GTTATCGCTGAAAATCTATCAGAAGAGGAGATTAAAGGTCTCAAAGCAATGEST: gi|298191902|gb|HO035984.1|HO035984
genomic: GAATGAAACAATTCAGGGCAATGAATAAGCTCAAGAAGCTAGCATTGAAGgtatggcatc ... atttctctagGTTATCGCTGAAAATCTATCAGAAGAGGAGATTAAAGGTCTCAAAGCAATG
EST: GAATGAAACAATTCAGGGCAATGAATAAGCTCAAGAAGCTAGCATTGAAG GTTATCGCTGAAAATCTATCAGAAGAGGAGATTAAAGGTCTCAAAGCAATGEST: gi|7146577|gb|AW508499.1|AW508499
genomic: GAATGAAACAATTCAGGGCAATGAATAAGCTCAAGAAGCTAGCATTGAAGgtatggcatc ... atttctctagGTTATCGCTGAAAATCTATCAGAAGAGGAGATTAAAGGTCTCAAAGCAATG
EST: GAATGAAACAATTCAGGGCAATGAATAAGCTCAAGAAGCTAGCATTGAAG GTTATCGCTGAAAAT
genomic: GAATGAAACAATTCAGGGCAATGAATAAGCTCAAGAAGCTAGCATTGAAGgtatggcatc ... atttctctagGTTATCGCTGAAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAGGTGGAGATGCATCTGATAAACCAATCGATAGTGCAGTTCTATCCAGAATGAAACAATTCAGGGCAATGAATAAGCTCAAGAAGCTAGCATTGAAGgtatggcatcaaacttagattaaaagcaactaaagtcaatgtcctttttctggcaggtccttgatattgttgaggaaggttgatttctcttttaattgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagcaa