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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCACATATCTAGTTGCTCATGAACCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCACgtaagatgagtttcaatataaattttcttgactgccattttatgcatgctactctctactttgaaccctccggcctccactaggtttattaaatctctct...

Basic information

species Glycine max
transcript GLYMA12G00830.5
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G00830.5 (Glycine max), 5'ss of exon 4
lower sequence: AT5G61500.1 (Arabidopsis thaliana), 5'ss of exon 5
------------TCCACATATCTAGTTGCTCATGAACCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCACgtaaga----tgagtttcaatataa-attttcttgactgccattttatgcatgctactctct-actttgaaccctccggcctccactaggtttattaaatctctct---------
            || || ||||| || ||||||||||||||||||||||| ||||| ||||||||||| || ||| ||||||| |||||||      | |||||   | |   |  |  ||  |      || |  ||    || ||| || ||      ||| |     |  |   |||| || |||| ||         
GCAACTCTTCAGTCAACTTATCTTGTGGCTCATGAACCTGATGACGATAACATTCTCCGAACTCGGACATATGATCTCAGCATAACgtaagcatcccgggtttcttcaaagtgtagtactgcgttttgacttttagatatagctttcttacatttgg---tccagtagtaagcaaacttat-aattctcactttggttcag

upper sequence: GLYMA12G00830.5 (Glycine max), 5'ss of exon 4
lower sequence: EFJ14759 (Selaginella moellendorffii), 5'ss of exon 5
-----------TCCACA-TATCTAGTTGCTCATGAACCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCACgtaagatgagtttcaatataaattttcttgactgccattttatgcatgctactctctactttgaaccctccggcctccactaggtttattaaatctctct
           | |||  |||||| | |||||||| || |||||  | ||||| || || |||||||| |||||||| ||||||||||||| | |  |||    || | ||||  |     || |   |  | | ||||| ||||                                         
ACTGCAGTACATGCACCCTATCTAATAGCTCATGAGCCGGATGATAACAATATCCTGCGTACTCGGACCTACGATATAAGCATCACgtaagctaacgttc----tagagtttcaagt---tcagtccttttaaggtactcactacag---------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31312555|gb|CD397758.1|CD397758
EST:     CCTGATGACGATAATATTCTTCGAACTCGGACTTACGATGTCAGCATCAC                         GTATGATAAATATTATCNAACACCACGAGTATGGCTTACTGGGTATGACGA
genomic: CCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCACgtaagatgag ... catttcgcagGTATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGA
EST: gi|192330861|gb|FK021620.1|FK021620
EST:     GACTTACGATATCAGCATCAC                         GTATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGA
genomic: GACTTACGATATCAGCATCACgtaagatgag ... catttcgcagGTATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGA
EST: gi|151408115|gb|EV277923.1|EV277923
EST:     CCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCAC                         GTATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGA
genomic: CCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCACgtaagatgag ... catttcgcagGTATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGA
EST: gi|193463512|gb|FK427436.1|FK427436
EST:     TTCGAACTCGGACTTACGATATCAGCATCAC                         GTATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGA
genomic: TTCGAACTCGGACTTACGATATCAGCATCACgtaagatgag ... catttcgcagGTATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGA
EST: gi|19346154|gb|BM891034.1|BM891034
EST:     CCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCAC                         GTATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGA
genomic: CCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCACgtaagatgag ... catttcgcagGTATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGA
EST: gi|21887729|gb|BQ740942.1|BQ740942
EST:     CCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCAC                         GTATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGA
genomic: CCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCACgtaagatgag ... catttcgcagGTATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGA