1 5' 3' | 2 5' 3' | 3 5' 3' |
TCGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGTTTGATCTATGATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatttaaatctttctgtgtcaattatgattataatttttcccctttgttaaaatgccttttttttttaattagacgggctgtttataaataata...
species | Glycine max |
transcript | GLYMA20G37190.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTAGAGAAATCAAGGAGGCAAATGAAGGAGAGAEST: gi|6567197|gb|AW234810.1|AW234810
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAEST: gi|17964649|gb|BM271381.1|BM271381
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCCAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAEST: gi|193611659|gb|FK560864.1|FK560864
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTAEST: gi|193647660|gb|FK593573.1|FK593573
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTA
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTAGAGAAATACAAAGGAAGCAAATGAAEST: gi|17023150|gb|BM094184.1|BM094184
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAAT-CAA-GGAAGCAAATGAA
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCCAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAEST: gi|298184841|gb|HO030054.1|HO030054
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAEST: gi|193325398|gb|FK291830.1|FK291830
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: TTCAGTTGAGAATGCCAAGTAAGTACGAGCCTAAGTACAGGCTTATCAGG AATAGGACTTGATACTAAEST: gi|192323207|gb|FK016338.1|FK016338
genomic: TTCAGTTGAGAATGCCAAG-AAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAAT-GGACTTGATACTAA
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAEST: gi|4396941|gb|AI495938.1|AI495938
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGEST: gi|13790809|gb|BG653400.1|BG653400
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAG
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAEST: gi|208106456|gb|GD905573.1|GD905573
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG AATGGACTTGATAEST: gi|298167320|gb|HO010759.1|HO010759
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATA
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAEST: gi|24136103|gb|BU926613.1|BU926613
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCCAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAEST: gi|5126552|gb|AI748288.1|AI748288
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG AATGGACTTGATAEST: gi|18040612|gb|BM308906.1|BM308906
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATA
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCCAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAEST: gi|21602519|gb|BQ612850.1|BQ612850
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAEST: gi|9899853|gb|BE608821.1|BE608821
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG AATGGACTTGATACTAGAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAEST: gi|298192673|gb|HO033107.1|HO033107
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTEST: gi|6913093|gb|AW394623.1|AW394623
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGT
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGTTTGATCTATGATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatttaaatctttctgtgtcaattatgattataatttttcccctttgttaaaatgccttttttttttaattagacgggctgtttataaataata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT