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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATCACTGCTTGTGGATAAATAACTGTGTTGGTTATTGGAATTATAAGGCTTTCTTTGTTTTTGTATTCTATGCCACCACGGCAAGTATTTATTCTACGgtatatttccaatctggcatctactggttctgtagtgaacaggattcctatttgacataagcttttacaatgtgcag

Basic information

species Glycine max
transcript GLYMA20G32280.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32280.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0019g04670.t01 (Vitis vinifera), 5'ss of exon 3
TCATCACTGCTTGTGGATAAATAACTGTGTTGGTTATTGGAATTATAAGGCTTTCTTTGTTTTTGTATTCTATGCCACCACGGCAAGTATTTATTCTACGgtatatttccaatctggca---tctactggttctgtagtgaacaggat---tcctatt-tgacataagcttttacaa-tgtgcag
||| ||||| ||||||||||| || ||||||||||||||||| |||||||| ||  |  |  |||| || ||||| || |  | ||| ||  | |||||||||| |||   || |||     ||  || ||| |    | | |  | |   ||| ||| |||||  |||||||  |  |    ||
TCACCACTGTTTGTGGATAAACAATTGTGTTGGTTATTGGAACTATAAGGCCTTTGTGATGCTTGTCTTATATGCAACTATTGGAAGCATCCACTCTACGgtatgttt--gatttggttctttccccttgttttaatattatctagttgtctccaattatgacagtagcttttctacctacatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10237203|gb|BE806091.1|BE806091
EST:     CTTTCTTTGTTTTTGTATTCTATGCCACCACGGCAAGTATTTATTCTACG                         ATCATATTTATGAGCTGTGTATTTCAGAAGGACTGGGATCCCATAAAAGGA
genomic: CTTTCTTTGTTTTTGTATTCTATGCCACCACGGCAAGTATTTATTCTACGgtatatttcc ... caatgtgcagATCATATTTATGAGCTGTGTATTTCAGAAGGACTGGGATCCCATTAAAGGA