1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GAGTTCATGTTGTTTATATGGCGGAGCTCCGTATCAAGGTCAGGAAATTAAGCTTAGGAGAGGTGTTGATATTGTCATTGGCACACCAGGTCGTGTGAAGgtaagtgcattaacactagttttgattatgtgtagctagtttgttatctccttgtatgaatgtacattatttgcaaaaatagattgtgcgaaagctagactttgtgtgttttaagacaaaaaatgagaatattttgtgatttccatctgggatgtattggtgcag
species | Glycine max |
transcript | GLYMA20G29060.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATATTGTCATTGGCACACCAGGTCGTGTGAAG GATCATATCGAGAAAGGGAATATTGACCTGAGCCAACTAAAGTTTCGTGTCEST: gi|207684889|gb|GD666206.1|GD666206
genomic: ATATTGTCATTGGCACACCAGGTCGTGTGAAGgtaagtgcat ... attggtgcagGATCATATCGAGAAAGGGAATATTGACCTGAGCCAACTAAAGTTTCGTGTC
EST: AGCTTAGGAGAGGTGTTGATATTGTCATTGGCACACCAGGTCGTGTGAAG GATCATATCGAGAAAGGGAATATTEST: gi|254316012|gb|GR825821.1|GR825821
genomic: AGCTTAGGAGAGGTGTTGATATTGTCATTGGCACACCAGGTCGTGTGAAGgtaagtgcat ... attggtgcagGATCATATCGAGAAAGGGAATATT
EST: AGCTTAGGAGAGGTGTTGATATTGTCATTGGCACACCAGGTCGTGTGAAG GATCATATCGAGAAAGGGAATATTGACCTGAGCCAACTAAAGTTTCGTGTCEST: gi|193316745|gb|FK279059.1|FK279059
genomic: AGCTTAGGAGAGGTGTTGATATTGTCATTGGCACACCAGGTCGTGTGAAGgtaagtgcat ... attggtgcagGATCATATCGAGAAAGGGAATATTGACCTGAGCCAACTAAAGTTTCGTGTC
EST: AGCTTAGGAGAGGTGTTGATATTGTCATTGGCACACCAGGTCGTGTGAAG GATCATATCGAGAAAGGGAATA
genomic: AGCTTAGGAGAGGTGTTGATATTGTCATTGGCACACCAGGTCGTGTGAAGgtaagtgcat ... attggtgcagGATCATATCGAGAAAGGGAATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTTCATGTTGTTTATATGGCGGAGCTCCGTATCAAGGTCAGGAAATTAAGCTTAGGAGAGGTGTTGATATTGTCATTGGCACACCAGGTCGTGTGAAGgtaagtgcattaacactagttttgattatgtgtagctagtttgttatctccttgtatgaatgtacattatttgcaaaaatagattgtgcgaaagctagactttgtgtgttttaagacaaaaaatgagaatattttgtgatttccatctgggatgtattggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG