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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGAGGTATTGCGTCGTAGTTATGGAAAGGAAATAGATATTTGGAGTGCAGGCATCATATTGTATATTCTTCTGAGTGGTGTACCACCTTTTTGGGCTGgtaagatcaaatcatagtttgaaaattttgcatatttacagtttatggttgagtttctttttaaaaaaattaactcttcaatgtgcaactggggtaagaatatgttgttaatatcttttgcag

Basic information

species Glycine max
transcript GLYMA17G01730.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24136888|gb|BU927398.1|BU927398
EST:     AGGCATCATATTGTATATTCTTCTGAGTGGTGTACCACCTTTTTGGGCTG                         AAACTGAAAAGGGAATATTTAATGCCATATTGGAAGGTGAAATTGATTTTG
genomic: AGGCATCATATTGTATATTCTTCTGAGTGGTGTACCACCTTTTTGGGCTGgtaagatcaa ... tcttttgcagAAACTGAAAAGGGAATATTTAATGCCATATTGGAAGGTGAAATTGATTTTG
EST: gi|193337122|gb|FK304966.1|FK304966
EST:     GGCATCATATTGTATATTCTTCTGAGTAGGTGTACCGCCTTTTTGGGCTG                         AAACTGAAAAGGGAATATTTAACGCCATATTGGAAGGTGAAATTGATTTTG
genomic: GGCATCATATTGTATATTCTTCTGAGT-GGTGTACCACCTTTTTGGGCTGgtaagatcaa ... tcttttgcagAAACTGAAAAGGGAATATTTAATGCCATATTGGAAGGTGAAATTGATTTTG
EST: gi|21888524|gb|BQ741737.1|BQ741737
EST:     AGGCATCATATTGTATATTCTTCTGAGTGGTGCACCACCTTTTTGGGCTG                         AAACTGAAAAGGGAATATTTAATGCCATATTGGAAGGTGGAATTGATTTTG
genomic: AGGCATCATATTGTATATTCTTCTGAGTGGTGTACCACCTTTTTGGGCTGgtaagatcaa ... tcttttgcagAAACTGAAAAGGGAATATTTAATGCCATATTGGAAGGTGAAATTGATTTTG