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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGGTTTCTGAAGCGTGCCGGAGAATGGCCACTCGGCGTGTCGATGCTGTTTTGTTGACTGATTCCAATGCTTTGCTCTCTGGAATCATGACTGACAAGgtttgtgttgtgtgtgcattttttttttacattgaaggcagtgtcaggaggtttataatacctcactctactcaaccaattgagttagactcacttgacaaaaaatataaaattttacgggatgtgtgtgtatatgaaattttacaagcttgtgcttgtgttcag

Basic information

species Glycine max
transcript GLYMA08G00560.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G00560.3 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0031g02750.t01 (Vitis vinifera), 5'ss of exon 2
GACGGTTTCTGAAGCGTGCCGGAGAATGGCCACTCGGCGTGTCGATGCTGTTTTGTTGACTGATTCCAATGCTTTGCTCTCTGGAATCATGACTGACAAGgtttgtgttgtgtgtgcattttttttttacattgaaggcagt-----gtcaggaggtttataatacctcactctactcaaccaattgagttagactcacttgacaaaaaatataaaattttacgggatgtgtgtgtatatgaaattttacaagcttgtgcttgtgttcag
 || || ||||| || ||||| || |||||  ||||| | || ||||||||||||||||| ||||| |||||| |||||||||||||  | || ||||||||||||      ||      ||||||  |  ||   |  | |      ||| | |  |||       |   | |  |    |  |||   | |||                                                                           
CACAGTGTCTGATGCATGCCGAAGGATGGCAGCTCGGAGAGTGGATGCTGTTTTGTTGACAGATTCAAATGCTCTGCTCTCTGGAATTGTTACAGACAAGgtttgtagaaaatgctagccttttttggatgttcttgtaaattcttgatcatgtgacttactg-gttttttttttttttttcttttgttgtggacag-------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295459|gb|FG987073.1|FG987073
EST:     TTTTGTTGACTGATTCCAATGCTTTGCTCTCTGGAATCATGACTGACAAG                         GACATTGCTACTAGAGTTATAGCGGAGGGTTTGCGGCCCGAGCAGACGATG
genomic: TTTTGTTGACTGATTCCAATGCTTTGCTCTCTGGAATCATGACTGACAAGgtttgtgttg ... ttgtgttcagGACATTGCTACTAGAGTTATAGCGGAGGGTTTGCGGCCCGAGCAGACGATG
EST: gi|193624002|gb|FK573868.1|FK573868
EST:     TTTTGTTGACTGATTCCAATGCTTTGCTCTCTGGAATCATGACTGACAAG                         GACATTGCTACTAGAGTTATAGCGGAGGGTTTGCGGCCCGAGCAGACGATG
genomic: TTTTGTTGACTGATTCCAATGCTTTGCTCTCTGGAATCATGACTGACAAGgtttgtgttg ... ttgtgttcagGACATTGCTACTAGAGTTATAGCGGAGGGTTTGCGGCCCGAGCAGACGATG
EST: gi|11687838|gb|BF595514.1|BF595514
EST:     TTTTGTTGACTGATTCCAATGCTTTGCTCTCTGGAATCATGACTGACAAG                         GACATTGCTACTAGAGTTATAGCGGAGGGTTTGCGGCCCGAGCAGACGATG
genomic: TTTTGTTGACTGATTCCAATGCTTTGCTCTCTGGAATCATGACTGACAAGgtttgtgttg ... ttgtgttcagGACATTGCTACTAGAGTTATAGCGGAGGGTTTGCGGCCCGAGCAGACGATG
EST: gi|208192665|gb|GD987560.1|GD987560
EST:     TTTTGTTGACTGATTCCAATGCTTTGCTCTCTGGAATCATGACTGACAAG                         GACATTGCTACTAGAGTTATAGCGGAGGGTTTGCGGCCCGAGCAGACGATG
genomic: TTTTGTTGACTGATTCCAATGCTTTGCTCTCTGGAATCATGACTGACAAGgtttgtgttg ... ttgtgttcagGACATTGCTACTAGAGTTATAGCGGAGGGTTTGCGGCCCGAGCAGACGATG
EST: gi|254333299|gb|GR850549.1|GR850549
EST:     TTTTGTTGACTGATTCCAATGCTTTGCTCTCTGGAATCATGACTGACAAG                         GACATTGCTACTAGAGTTATAGCGGAGGGTTTGCGGCCCGAGCAGACGATG
genomic: TTTTGTTGACTGATTCCAATGCTTTGCTCTCTGGAATCATGACTGACAAGgtttgtgttg ... ttgtgttcagGACATTGCTACTAGAGTTATAGCGGAGGGTTTGCGGCCCGAGCAGACGATG