1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GAAGACTTATGGAGGGAAACATTCCCTGTCGGAACAGAGgtttgtctatttatttcataattcttcttcgtttatagcttcatttctgttgtgtattttttcttattgcaccttattgtgttgccag
species | Glycine max |
transcript | GLYMA04G39790.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAAGACTTATGGAGGGAAACATTCCCTGTCGGAACAGAG TGGGATCAATTGGNTTCTGTGTATCEST: gi|151411271|gb|EV281082.1|EV281082
genomic: GAAGACTTATGGAGGGAAACATTCCCTGTCGGAACAGAGgtttgtctat ... gtgttgccagTGGGATCAATTGGATTCTGTGTATC
EST: GAAGACTTATGGAGGGAAACATTCCCTGTCGGAACAGAG TGGGATCAATTGGATTCTGTGTATCAATACTAGTGGAATTTCTCTAACCTGEST: gi|208326081|gb|GE119735.1|GE119735
genomic: GAAGACTTATGGAGGGAAACATTCCCTGTCGGAACAGAGgtttgtctat ... gtgttgccagTGGGATCAATTGGATTCTGTGTATCAATACAAGTGGAATTTCTCTAACCTG
EST: GAAGACTTATGGAGGGAAACATTCCCTGTCGGAACAGAG TGGGATCAATTAGGAATTCTGTGTATCEST: gi|208171055|gb|GD969310.1|GD969310
genomic: GAAGACTTATGGAGGGAAACATTCCCTGTCGGAACAGAGgtttgtctat ... gtgttgccagTGGGATCAATT-GGA-TTCTGTGTATC
EST: GAAGACTTATGGAGGGAAACATTCCCTGTCGGAACAGAG TGGGATCAATTGGAATTCTGTGTATCEST: gi|208282968|gb|GE077300.1|GE077300
genomic: GAAGACTTATGGAGGGAAACATTCCCTGTCGGAACAGAGgtttgtctat ... gtgttgccagTGGGATCAATTGGA-TTCTGTGTATC
EST: GAAGACTTATGGAGGGAAACATTCCCTGTCGGAACAGAG TGGGATCAATTGGATTCTGTGTATCEST: gi|207740276|gb|GD714214.1|GD714214
genomic: GAAGACTTATGGAGGGAAACATTCCCTGTCGGAACAGAGgtttgtctat ... gtgttgccagTGGGATCAATTGGATTCTGTGTATC
EST: GAAGACTTATGGAGGGAAACATTCCCTGTCGGAACAGAG TGGGATCAATTGGATTCTGTGTATC
genomic: GAAGACTTATGGAGGGAAACATTCCCTGTCGGAACAGAGgtttgtctat ... gtgttgccagTGGGATCAATTGGATTCTGTGTATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGACTTATGGAGGGAAACATTCCCTGTCGGAACAGAGgtttgtctatttatttcataattcttcttcgtttatagcttcatttctgttgtgtattttttcttattgcaccttattgtgttgccag
- - - - TGGAGG