1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GGTCTAAAGACTGGAATGTATTATCTTCGATCGCGAGCTGCAGCCGATGCTATTAAGTTCACCGTTGACACCTCTGCTCTCAAAgtaataagaattcattattacgagattttgctttcatgtgatttgcacattttttatgtgaaatatttttttgctgtggatgcag
species | Glycine max |
transcript | GLYMA04G39500.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: GAGCTGCAGCCGATGCTATTAAGTTCACCGTTGACACCTCTGCTTTCAAA GAAAAATCCAATGTAGAGTATGATGATAATACCAAAATGGCACAGATGGTGEST: gi|14011406|gb|BG726328.1|BG726328
genomic: GAGCTGCAGCCGATGCTATTAAGTTCACCGTTGACACCTCTGCTCTCAAAgtaataagaa ... gtggatgcagGAAAAATCCAATGTAGAGTATGATGATAATACAAAAATGGCACAGATGGTG
EST: GAGCTGCAGCCGATGCTATTAAGTTCACCGTTGACACCTTTGCTCTCAAA GAAAAATCCAATGTAGAGTATGACGATAATACAAAAATGGCACAGATGGTGEST: gi|6963924|gb|AW432617.1|AW432617
genomic: GAGCTGCAGCCGATGCTATTAAGTTCACCGTTGACACCTCTGCTCTCAAAgtaataagaa ... gtggatgcagGAAAAATCCAATGTAGAGTATGATGATAATACAAAAATGGCACAGATGGTG
EST: GAGCTGCAGCCGATGCTATTAAGTTCACCGTTGACACCTCTGCTCTCANA GAAAAATCCAATGTAGAGTATGANTGATA-TACANAAATGGCACCAGATG-
genomic: GAGCTGCAGCCGATGCTATTAAGTTCACCGTTGACACCTCTGCTCTCAAAgtaataagaa ... gtggatgcagGAAAAATCCAATGTAGAGTATGA-TGATAATACAAAAATGGCAC-AGATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCTAAAGACTGGAATGTATTATCTTCGATCGCGAGCTGCAGCCGATGCTATTAAGTTCACCGTTGACACCTCTGCTCTCAAAgtaataagaattcattattacgagattttgctttcatgtgatttgcacattttttatgtgaaatatttttttgctgtggatgcag
- - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - CTGCAG