1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTATGTGATTTTGGGTTGTCACGGTTGAAGCACAACACATTTTTGTCATCCAAGTCAACTGCTGGAACGgtgagaatatgagaaagtctttgttattctgtagtgcatttgtttagacacatgcagcatgtgtctgatctgcattctctacattccactgacatgattttatcaatgttag
species | Glycine max |
transcript | GLYMA20G37330.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CACGGTTGAAGCACAACACATTTTTGTCATCCAAGTCAACTGCTGGAACG CCGGAATGGATGGCTCCTGAAGTTCTCCGCAATGAACCCTCAAATGAGAAEST: gi|298181852|gb|HO026027.1|HO026027
genomic: CACGGTTGAAGCACAACACATTTTTGTCATCCAAGTCAACTGCTGGAACGgtgagaatat ... tcaatgttagCCGGAATGGATGGCTCCTGAAGTTCTCCGCAATGAACCCTCAAATGAGAA
EST: CACGGTTGAAGCACAACACTTTTTTGTCATCCAAGTCAACTGCTGGAACG CCGGAATGGATGGCTCCTGAAGTTCTCCGCAATGAGCCCTCAAATGAGAAEST: gi|4396654|gb|AI495651.1|AI495651
genomic: CACGGTTGAAGCACAACACATTTTTGTCATCCAAGTCAACTGCTGGAACGgtgagaatat ... tcaatgttagCCGGAATGGATGGCTCCTGAAGTTCTCCGCAATGAACCCTCAAATGAGAA
EST: CACGGTTGAAGCACAACACATTTTTGTCATCCAAGTCAACTGCTGGAACG CCGGAATGGATGGCTCCTGAAGTTCTCCGCAATGAACCCTCAAATGAGAAEST: gi|19054297|gb|BM732964.1|BM732964
genomic: CACGGTTGAAGCACAACACATTTTTGTCATCCAAGTCAACTGCTGGAACGgtgagaatat ... tcaatgttagCCGGAATGGATGGCTCCTGAAGTTCTCCGCAATGAACCCTCAAATGAGAA
EST: CACGGTTGAAGCACAACACATTTTTGTCATCCAAGTCAACTGCTGGAACG CCGGAATGGATGGCTCCTGAAGTTCTCCGCAATGAACCCTCAAATGAGAAEST: gi|33389731|gb|CA852938.1|CA852938
genomic: CACGGTTGAAGCACAACACATTTTTGTCATCCAAGTCAACTGCTGGAACGgtgagaatat ... tcaatgttagCCGGAATGGATGGCTCCTGAAGTTCTCCGCAATGAACCCTCAAATGAGAA
EST: CACGGTTGAAGCACAACACATTTTTGTCATCCAAGTCAACTGCTGGAACG CCGGAATGGATEST: gi|151393400|gb|EV263275.1|EV263275
genomic: CACGGTTGAAGCACAACACATTTTTGTCATCCAAGTCAACTGCTGGAACGgtgagaatat ... tcaatgttagCCGGAATGGAT
EST: CACGGTTGAAGCACAACACATTTTTGTCATCCAAGTCAACTGCTGGAACG CCGGAATGGATGGCTCCTGAAGTTCTCCGCAATGAACCCTCAAATGAGAA
genomic: CACGGTTGAAGCACAACACATTTTTGTCATCCAAGTCAACTGCTGGAACGgtgagaatat ... tcaatgttagCCGGAATGGATGGCTCCTGAAGTTCTCCGCAATGAACCCTCAAATGAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATGTGATTTTGGGTTGTCACGGTTGAAGCACAACACATTTTTGTCATCCAAGTCAACTGCTGGAACGgtgagaatatgagaaagtctttgttattctgtagtgcatttgtttagacacatgcagcatgtgtctgatctgcattctctacattccactgacatgattttatcaatgttag
- - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA