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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATAAGCCAGCGAAAGATTCTCAAGGCAACCATAAGAAGTTGGGGTCTGCTGGTCTTGCTTTGCATTATGCGAACATTATCACTCAAATTGATACTCTTgtgagttaaggattttacttgaataaatctacaatatttattattgtcttggatgttcaaattatgttagtctctgtttgtcatgtaatattgtttctta...

Basic information

species Glycine max
transcript GLYMA20G31400.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31400.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G34320.1 (Arabidopsis thaliana), 5'ss of exon 9
TGATAAGCCAGCGAAAGATTCTCAAGGCAACCATAAGAAGTTGGGGTCTGCTGGTCTTGCTTTGCATTATGCGAACATTATCACTCAAATTGATACTCTTgtgagttaaggattttacttgaataaatc-tacaatatttattattgtcttggatgttcaaattatgttagtctctgtttgtcatgtaatattgtttctta-
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TGATAAGCCTGCAAATGACCCGCCAATCAATCATAAAAAACTGGGCTCTGCTGGTCTTGCCTTGCATTACGCAAACATCATTACTCAAATTGATACTCTTgtaagtatattattcttttttatcacttagttttactttcaatgtttggcctgttgtccaaactctaggttcctgggattgt-aaatcgt-ttgtttctcgt

upper sequence: GLYMA20G31400.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv18s0076g00260.t01 (Vitis vinifera), 5'ss of exon 8
TGATAAGCCAGCGAAAGATTCTCAAGGCAACCATAAGAAGTTGGGGTCTGCTGGTCTTGCTTTGCATTATGCGAACATTATCACTCAAATTGATACTCTTgtgagttaaggattttacttgaataaatctacaatatttattattgtcttggatgttcaaattatgttagtctctgtttgtcatgtaatattgtttctta-----
|||||| |||   |||| ||||  |  ||||||||| ||||||||   |||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||    | || | |  | |   | |      ||||  ||| | ||  |||   |   | ||||  ||  | || |  |  ||  | ||  |  ||     
TGATAAACCAATCAAAGGTTCTACAAACAACCATAAAAAGTTGGGCAATGCTGGTCTTGCATTACATTATGCGAATATTATCACTCAAATTGATACTCTTgtgagtttgccacttcattcaattt--tgtgtttcctttaccattctttt--atgactagtatttgtttctcaattttcggaac-tatgagtgaatgctatcgct