Sequence
atgc intronic sequence ATGC exonic sequenceGCTAGGGGCATGAATTGCTTACACACCAGCACACCTACAATTGTTCATCGAGATCTAAAGTCTCCAAATCTTTTGGTTGATAAGAACTGGAATGTTAAGgtatatgattgaaaacttatgcaggttataatatttgcttattctttattatcgcataacataactaaagagtgccataaaaagtagtgcaataaaataa...
Basic information
species | Glycine max |
transcript | GLYMA20G37330.3 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G37330.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G175563_T01 (Zea mays), 5'ss of exon 9
GCTAGGGGCATGAATTGCTTACACACCAGCACACCTACAATTGTTCATCGAGATCTAAAGTCTCCAAATCTTTTGGTTGATAAGAACTGGAATGTTAAGgtatatgattgaaaacttatgcaggttataatatttgcttattctttattatcgcataacataactaaagagtgccataaaaagtagtgcaataaaataa
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GCCAAAGGTATGAATTGCCTGCACACTAGCATGCCTACAATTGTTCATCGAGATCTGAAATCTCCAAACTTGCTGGTTGACAATAATTGGAATGTTAAGgtgtgtgat------cttgcccacgat-taatatttggccaccaataatcatt-cacatcaata-tatgcaatataacag--------------------
upper sequence: GLYMA20G37330.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G08720.1 (Arabidopsis thaliana), 5'ss of exon 9
GCTAGGGGCATGAATTGCTTACACACCAGCACACCTACAATTGTTCATCGAGATCTAAAGTCTCCAAATCTTTTGGTTGATAAGAACTGGAATGTTAAGgtat-atgattgaaaacttatgcaggttataatatttgcttattctttattatcgcataacataactaaagagtgccataaaa--agtagtgcaataaaataa
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GCAATGGGGATGAACTGCTTACACACCAGTACACCGACAATTGTTCATCGTGATCTCAAAACACCAAACCTTTTGGTTGATAACAACTGGAATGTTAAGgtaggaagacttttttcttaagttgtccaacgaatatacttgtttactctaatggta---aataaatagattttgtttttatcttactaaccttgtag-----
upper sequence: GLYMA20G37330.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv14s0030g01440.t01 (Vitis vinifera), 5'ss of exon 9
GCTAGGGGCATGAATTGCTTACACACCAGCACACCTACAATTGTTCATCGAGATCTAAAGTCTCCAAATCTTTTGGTTGATAAGAACTGGAATGTTAAGgtatatgattg--------aaaacttatgcaggttataatat--ttgcttattctttattatcgcataacataactaaagagtgccataaaaagtagtgcaataaaataa
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GCAAAGGGTATGAATTGTTTGCACACCAGTTTACCAACAATTGTTCACCGGGATTTGAAGTCACCAAATCTGCTGGTTGATAAGAACTGGAATGTCAAGgtatggcattgtctttttaacatttcatttagacaacagtaggattgggagttctttttttcttct---cttttcccaagttttgtgttacaattgaagcaat-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33389731|gb|CA852938.1|CA852938EST: GAGATCTAAAGTCTCCAAATCTTTTGGTTGATAAGAACTGGAATGTTAAG GTATGTGATTTTGGGTTGTCACGGTTGAAGCACAACACATTTTTGTCATCC
genomic: GAGATCTAAAGTCTCCAAATCTTTTGGTTGATAAGAACTGGAATGTTAAGgtatatgatt ... ctttctacagGTATGTGATTTTGGGTTGTCACGGTTGAAGCACAACACATTTTTGTCATCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTAGGGGCATGAATTGCTTACACACCAGCACACCTACAATTGTTCATCGAGATCTAAAGTCTCCAAATCTTTTGGTTGATAAGAACTGGAATGTTAAGgtatatgattgaaaacttatgcaggttataatatttgcttattctttattatcgcataacataactaaagagtgccataaaaagtagtgcaataaaataa
- - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC